PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G100700.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 207aa MW: 23795 Da PI: 8.9064

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G100700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.3	1.6e-19	108	198	3	98
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ +s+v++s +l +pk+fa+++ ++ ++ +tl+ ++g sW +++ + ++ r l++GWkeF+ an+L+e D+++F+l++r+ el+v Aqcoe6G100700.2.p 108 VTMRRSYVSESYCLNIPKDFADKYLKDAFQG--ITLQLSNGGSWHIRY--QVGDHR-KLGRGWKEFAVANHLQEEDVCIFELVNRNHIELKV 194 57889*****************7665565..8888888****..666555.59**********************999999999 PP EEE- CS B3 95 kvfr 98 +fr Aqcoe6G100700.2.p 195 FIFR 198 9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-24	98	198	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-23	101	200	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.62E-22	104	198	No hit	No description
PROSITE profile	PS50863	13.733	106	200	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-13	106	200	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-17	108	198	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSSLPGVSLD EPVNDNLQQM KNKESALELS SSMFCKNVHY NQINSTRLKL ANDEPDRNNQ 60 ERGKKESSIL MQGLTKVSVA RRVMNNQEKE RSIIAARAFT SENPFCIVTM RRSYVSESYC 120 LNIPKDFADK YLKDAFQGIT LQLSNGGSWH IRYQVGDHRK LGRGWKEFAV ANHLQEEDVC 180 IFELVNRNHI ELKVFIFRVR SLQHNE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	8e-21	78	199	21	142	B3 domain-containing transcription factor VRN1
4i1k_B	8e-21	78	199	21	142	B3 domain-containing transcription factor VRN1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	6e-22	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G100700.2.p