PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G101400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 312aa    MW: 35774.1 Da    PI: 10.0907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G101400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.61.6e-2024114199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffkv     +++s rl +p  f+++++g+   + +++l+d+ gr+W v++  +   + +++++GW+eFvk + L +g+f+vF++dg+s+f  
  Aqcoe6G101400.1.p  24 FFKVY--LPAHSSIRLKIPTAFINSFNGI--LPEKIMLKDSVGRVWHVEV--KEVENDFFFQSGWQEFVKMHSLVVGEFLVFRYDGNSTF-- 107
                        77877..66777889***********888..6779***************..999999****************************9999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                         vk++++
  Aqcoe6G101400.1.p 108 EVKLYDH 114
                        8887776 PP
2B346.37.4e-152142961296
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                        ++  + +pk+ + ++++k   + ++ l+d++g+sW   +++ k +++  + +GW +F+k n+Lke+D + F++ ++ s++++ + v
  Aqcoe6G101400.1.p 214 ARYFVHIPKQVLIDNNIK--IQPKIFLRDPNGKSWPASVRFAKDGRTQ-ICSGWYDFCKGNNLKENDKCKFEFLQTrSRGKFIIDV 296
                        555678*****9999665..4449***************998887665.666********************88776988877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2421117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.73422115IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-2423117IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-1824113No hitNo description
SMARTSM010191.5E-1724115IPR003340B3 DNA binding domain
PfamPF023623.8E-1824113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-18196297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-19198299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.985203300IPR003340B3 DNA binding domain
SMARTSM010196.0E-8204300IPR003340B3 DNA binding domain
CDDcd100171.84E-12206294No hitNo description
PfamPF023621.8E-13218296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVKIYKKRSS LSSSSSFDNV GCQFFKVYLP AHSSIRLKIP TAFINSFNGI LPEKIMLKDS  60
VGRVWHVEVK EVENDFFFQS GWQEFVKMHS LVVGEFLVFR YDGNSTFEVK LYDHSGCEKE  120
ETLDDKNINK AVCFIKEEDN KEASNARRKP ILAICDSKHK GSKVLKKADK SRYGFSRPER  180
ISAKYVQKNM VSKASETDQP KPHFDVVVNG NGTARYFVHI PKQVLIDNNI KIQPKIFLRD  240
PNGKSWPASV RFAKDGRTQI CSGWYDFCKG NNLKENDKCK FEFLQTRSRG KFIIDVHIPR  300
TKRKGFCVAD T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E9H50.0A0A2G5E9H5_AQUCA; Uncharacterized protein
STRINGAquca_010_00344.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-30B3 family protein