PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G101400.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 284aa    MW: 32551.3 Da    PI: 9.9038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G101400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.6e-197861499
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       ++  +p  f+++++g+   + +++l+d+ gr+W v++  +   + +++++GW+eFvk + L +g+f+vF++dg+s+f   vk++++
  Aqcoe6G101400.2.p  7 NLKKIPTAFINSFNGI--LPEKIMLKDSVGRVWHVEV--KEVENDFFFQSGWQEFVKMHSLVVGEFLVFRYDGNSTF--EVKLYDH 86
                       55689*****999888..6779***************..999999****************************9999..8887776 PP
2B346.66.2e-151862681296
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                        ++  + +pk+ + ++++k   + ++ l+d++g+sW   +++ k +++  + +GW +F+k n+Lke+D + F++ ++ s++++ + v
  Aqcoe6G101400.2.p 186 ARYFVHIPKQVLIDNNIK--IQPKIFLRDPNGKSWPASVRFAKDGRTQ-ICSGWYDFCKGNNLKENDKCKFEFLQTrSRGKFIIDV 268
                        555678*****9999665..4449***************998887665.666********************88776988877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.129187IPR003340B3 DNA binding domain
SMARTSM010197.5E-9487IPR003340B3 DNA binding domain
PfamPF023622.0E-16885IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-21989IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-211089IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-151185No hitNo description
Gene3DG3DSA:2.40.330.101.7E-18168269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19170271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.985175272IPR003340B3 DNA binding domain
SMARTSM010196.0E-8176272IPR003340B3 DNA binding domain
CDDcd100175.89E-13178266No hitNo description
PfamPF023621.5E-13190268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGLADQNLKK IPTAFINSFN GILPEKIMLK DSVGRVWHVE VKEVENDFFF QSGWQEFVKM  60
HSLVVGEFLV FRYDGNSTFE VKLYDHSGCE KEETLDDKNI NKAVCFIKEE DNKEASNARR  120
KPILAICDSK HKGSKVLKKA DKSRYGFSRP ERISAKYVQK NMVSKASETD QPKPHFDVVV  180
NGNGTARYFV HIPKQVLIDN NIKIQPKIFL RDPNGKSWPA SVRFAKDGRT QICSGWYDFC  240
KGNNLKENDK CKFEFLQTRS RGKFIIDVHI PRTKRKGFCV ADT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E9H50.0A0A2G5E9H5_AQUCA; Uncharacterized protein
STRINGAquca_010_00344.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-24B3 family protein