PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G112200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 531aa    MW: 60168 Da    PI: 5.6532
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G112200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.41.3e-931705293374
               GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++L+++A + +s++l  aq +Larl+++ ++p g+p+qR a+yf+eAL+  l++      + ++  + s+ + +++++a+k fse+sPi  f
  Aqcoe6G112200.1.p 170 DQLIRAAACYESNELPSAQVILARLNQQlRNPIGKPLQRSAFYFKEALQFLLSG------SNFAEINLSSLEIVHKIKAYKSFSEISPITMF 255
                        68************************998************************9......4444444444569******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                        +++taNqa+lea++g+  +Hi+Df+i+ G+QW++++q++as++++    p s+RiT+v ++e   + e + ++++L++fA+elg++f+ +++
  Aqcoe6G112200.1.p 256 ANFTANQALLEALDGAMFIHIVDFEIGIGGQWASFMQEIASKAKSrnvlPSSIRITAVIPEE--CSMEASLIRDNLNQFAQELGIQFQLEFI 345
                        ****************************************99855455588*********66..99999*********************** PP

               GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl 271
                        + +++e++ ++++r+ +gE +aVnl+ +++r ++ s s++     +L++++++sP++ v++++e   d+ ++sF + f++ le+ys+lf+sl
  Aqcoe6G112200.1.p 346 LFSTFEEVLFNSIRFINGELIAVNLSPRIFRRFRTSESISG----FLRFLRRVSPRITVFMDSEgcRDTRGSSFRRNFINGLEFYSSLFESL 433
                        *********************************88888888....*******************53355889******************** PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  + + e  + +E+ ll+++i   v ++g++       +  Wre ++++G+ pv++se++ +qa+ l+r+ + +g++v +++gs++l+W+
  Aqcoe6G112200.1.p 434 DAASGGDVELVRRIEKYLLRPKIFGSVYAAGNS-------VLPWRELFSSVGMIPVQFSEFTDSQAEWLVRRAQIRGFQVAKRQGSMLLCWH 518
                        99999999***********************98.......889************************************************* PP

               GRAS 364 drpLvsvSaWr 374
                        +r+Lv++SaWr
  Aqcoe6G112200.1.p 519 ERELVATSAWR 529
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.287142509IPR005202Transcription factor GRAS
PfamPF035144.5E-91170529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MRSPFNTLQN HFSHPKTTTN NTPSQTTINT TQFTNYEPTS VLDLRRSPSP VLGGSDSINN  60
FTAISGVSDD SPLHWEENVV LPTTHHHLLS SSEDWDSMML NLSEKDESTL LFKNNLFEQQ  120
QSPSPLLSDH SFFNEFNLSS NHPQTYTQSI NNNEIYIESS CVEFDCSQLD QLIRAAACYE  180
SNELPSAQVI LARLNQQLRN PIGKPLQRSA FYFKEALQFL LSGSNFAEIN LSSLEIVHKI  240
KAYKSFSEIS PITMFANFTA NQALLEALDG AMFIHIVDFE IGIGGQWASF MQEIASKAKS  300
RNVLPSSIRI TAVIPEECSM EASLIRDNLN QFAQELGIQF QLEFILFSTF EEVLFNSIRF  360
INGELIAVNL SPRIFRRFRT SESISGFLRF LRRVSPRITV FMDSEGCRDT RGSSFRRNFI  420
NGLEFYSSLF ESLDAASGGD VELVRRIEKY LLRPKIFGSV YAAGNSVLPW RELFSSVGMI  480
PVQFSEFTDS QAEWLVRRAQ IRGFQVAKRQ GSMLLCWHER ELVATSAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3120352937375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255200.10.0PREDICTED: scarecrow-like protein 15
TrEMBLA0A2G5EAD70.0A0A2G5EAD7_AQUCA; Uncharacterized protein
STRINGAquca_010_00433.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-127GRAS family protein