PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G112700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 518aa    MW: 55626.3 Da    PI: 7.769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G112700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056890123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C+k F r  nL+ H r H
  Aqcoe6G112700.1.p 68 FVCEICNKGFQRDQNLQLHRRGH 90
                       89*******************88 PP
2zf-C2H215.55.1e-05144166123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k +  +s+ k H++t+
  Aqcoe6G112700.1.p 144 WKCEKCSKKYAVQSDWKAHLKTC 166
                        58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-66790No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496890IPR007087Zinc finger, C2H2
SMARTSM003550.0176890IPR015880Zinc finger, C2H2-like
PfamPF121718.3E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355250109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-6139164No hitNo description
SMARTSM0035579144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAMEFEISSS EQRGVSSVSG EVREASVSSS ANQIATTTKR KRNLPGMPDP DAEVIALSPK  60
TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS TTEIRKRVYV CPETSCVHHD  120
PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KKYAVQSDWK AHLKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA KVQIVPISVP EEGQKSLQSF ASSSSSPPPL PSPSPVPLVT  240
SPTTTVEFDA LKNQNRELPE NTTTGILRQI HPSTCINGSS GSSSTSSSNN SIFANLFASS  300
TMGGGLQPQT SSFSDLICAM ARSERPTGFE QGSAPESTSL CLSTSNGSNL FTLDDRQFAP  360
PSSQPTMSAT ALLQKAAQMG ATATNGSFLR SLGVPLSSSS GHQDNLQWND KIESEPSSAV  420
SGLEIGRLPC DGNTRLTELM MGPSTLFGPE PTTLDFLGLG MGGNGSSKDS RYSALMTSID  480
DSLNIAAAAV SFGTGNLSRE DAWEGGNEMK LNASALP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35140202365Zinc finger protein JACKDAW
5b3h_F2e-35140202365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244313.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_010244314.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-151IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2G5E9X60.0A0A2G5E9X6_AQUCA; Uncharacterized protein
STRINGAquca_010_00437.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-104C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]