PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G118000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 615aa    MW: 68710.9 Da    PI: 5.1082
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G118000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.57.6e-1122486143374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + Ll cA+ +s+++ e+a ++L+rl+e +s++gd+++R+a+yf eAL +r+++      k+l+  +t ++ns+e l ++k++++++P+ kf+
  Aqcoe6G118000.1.p 248 KSLLLCAR-ISDSEPEKAIKTLNRLRESVSERGDSTERVAFYFSEALFSRISS------KSLKNFPTFDSNSEEFLLSYKALNDACPYSKFA 332
                        67999*99.88899**************************************9......777777777778********************* PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        hltaNqaIlea+e+++++Hi+Df+i qGlQW+aLlqaLa+R++g+p  +Ri g+ +p+ g   + +l +tg+rL++fAe l+++++f++ + 
  Aqcoe6G118000.1.p 333 HLTANQAILEATESANQIHIVDFGIVQGLQWAALLQALATRSSGKPtLIRISGIPAPALGksPAASLIATGNRLREFAELLELNIQFEP-IL 423
                        ******************************************8877589*******999988999************************.79 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        + +e+l+ +++rv+++E+laVn++lql++ll e++   +   + Lkl ksl+Pkv+++ e e+++n+ ++ +rf +a++yysa+f+sle +l
  Aqcoe6G118000.1.p 424 TPIEELNESSFRVNSDEVLAVNFMLQLYNLLGETTLAVE---KALKLAKSLNPKVLTLGEYEVSLNRVEYYDRFKNAMKYYSAVFESLEPSL 512
                        9******************************77766666...9************************************************* PP

               GRAS 276 preseerikvErellgreivnvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkd 364
                         r+se+r  vEr +lgr+i++vv   eg++rrer+e++e+W++ +e++GF+++++s++a++qa+ ll +++ s  y++ e+   ++ l+W++
  Aqcoe6G118000.1.p 513 ERDSEDRLQVERLILGRRIMSVVGPgEGSMRRERMEEKEEWKNLIESCGFEAIAVSHYAVSQADILLWNYNySSKYSLVESPPGFLsLCWNG 604
                        ***********************8538999*****************************************9999**9999777777***** PP

               GRAS 365 rpLvsvSaWr 374
                         pL++vS+Wr
  Aqcoe6G118000.1.p 605 TPLLTVSSWR 614
                        *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.769220592IPR005202Transcription factor GRAS
PfamPF035142.6E-109248614IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQHQQQIQ QQQQQQQQQQ QQQELLGANS FSWNGSQYPT  60
SFGFGYSGIG IPDHQYNHHH HNHHHHHHHQ SIVGTSEIGE SALQFTHIDQ PSSEFRLSDL  120
GSNPGEFDSD DWMESLMCGA AGAESTTESS EQQQQQLCET WRSNPEFTIH VSDPFVSSSS  180
SQLTLPSPLF SDLQKPLFSN PPPLPTLKES SPPIPPSLTQ KNKEICTVST HSPETESSPS  240
HSPCSLLKSL LLCARISDSE PEKAIKTLNR LRESVSERGD STERVAFYFS EALFSRISSK  300
SLKNFPTFDS NSEEFLLSYK ALNDACPYSK FAHLTANQAI LEATESANQI HIVDFGIVQG  360
LQWAALLQAL ATRSSGKPTL IRISGIPAPA LGKSPAASLI ATGNRLREFA ELLELNIQFE  420
PILTPIEELN ESSFRVNSDE VLAVNFMLQL YNLLGETTLA VEKALKLAKS LNPKVLTLGE  480
YEVSLNRVEY YDRFKNAMKY YSAVFESLEP SLERDSEDRL QVERLILGRR IMSVVGPGEG  540
SMRRERMEEK EEWKNLIESC GFEAIAVSHY AVSQADILLW NYNYSSKYSL VESPPGFLSL  600
CWNGTPLLTV SSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1502466144375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254864.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2G5EAM10.0A0A2G5EAM1_AQUCA; Uncharacterized protein
STRINGAquca_010_00478.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-156GRAS family protein