PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G120300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 94aa    MW: 10759.1 Da    PI: 10.003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G120300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08751244
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT    +l+ +a + + ++   +W+ Ia+ +g g+t  ++k  +
  Aqcoe6G120300.1.p  7 SNWTSKQNKLFEEALAIYDKNtpdRWHNIAKAVG-GKTVDEVKRQY 51
                       58********************************.********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.178459IPR017884SANT domain
SMARTSM007177.3E-8557IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-13762IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-4761IPR009057Homeodomain-like
CDDcd001671.54E-6855No hitNo description
PfamPF002499.8E-6851IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSRTSSSNWT SKQNKLFEEA LAIYDKNTPD RWHNIAKAVG GKTVDEVKRQ YELLVEDVRQ  60
IEAGKVPFPN YRNSGANSSI SKEEQRLRYL KLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-35293493RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071856.11e-43protein RADIALIS-like 3
SwissprotF4JVB82e-37RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2G5EA682e-57A0A2G5EA68_AQUCA; Uncharacterized protein
STRINGAquca_010_00499.13e-58(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-39RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]