PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G133900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 421aa MW: 48149.4 Da PI: 7.0961

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G133900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	153	176	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H Aqcoe6G133900.1.p 153 YVCNVCGRKCKTNLDLKKHFKQlH 176 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	7.5E-9	73	148	IPR029060	PIN domain-like
SMART	SM00355	0.0048	153	176	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.115	153	181	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	155	176	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.10E-13	165	307	No hit	No description
Gene3D	G3DSA:3.40.50.1010	7.5E-9	238	307	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MQTLCNPIDL LLLKPNKPLY SISSPFFFPP SISHKTHKFH SKCLYITCST SSSSSSSADI 60 DMVRNKEGVY SAKPKKVVVL WDLDNKPPKG PPYQAAMSLK KVAQNFGNVI DISAYANRHA 120 FIHLPQWVRE ERSQRKQIDI LEKKGMVIPS QPYVCNVCGR KCKTNLDLKK HFKQLHERER 180 EKKLSRMRSL KGKKRQKYKE RFISGNVKYE EAARSLLKPK VGYGLASELR RAGVFVKMVE 240 DKPQSADWAL KRQMQHSMSR GVDWMVLVTD DSDFSDMLRR ARESNLQTVV VGDSSRALGR 300 HADLWVPWVE VENGEIGEEE LFSSRTRNDA YSQIDDDDDG GLFSVTEFDE DSDYDSHLDQ 360 VVDRIVVPNS GVRISAFSEG EEEVDKVRTN DHNRKFPSLV EKDLFWDSEG EESDDDDDYL 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MQTLCNPIDL LLLKPNKPLY SISSPFFFPP SISHKTHKFH SKCLYITCST SSSSSSSADI  60
DMVRNKEGVY SAKPKKVVVL WDLDNKPPKG PPYQAAMSLK KVAQNFGNVI DISAYANRHA  120
FIHLPQWVRE ERSQRKQIDI LEKKGMVIPS QPYVCNVCGR KCKTNLDLKK HFKQLHERER  180
EKKLSRMRSL KGKKRQKYKE RFISGNVKYE EAARSLLKPK VGYGLASELR RAGVFVKMVE  240
DKPQSADWAL KRQMQHSMSR GVDWMVLVTD DSDFSDMLRR ARESNLQTVV VGDSSRALGR  300
HADLWVPWVE VENGEIGEEE LFSSRTRNDA YSQIDDDDDG GLFSVTEFDE DSDYDSHLDQ  360
VVDRIVVPNS GVRISAFSEG EEEVDKVRTN DHNRKFPSLV EKDLFWDSEG EESDDDDDYL  420
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007222703.1	1e-177	uncharacterized protein LOC18791925
TrEMBL	A0A2G5EAU1	0.0	A0A2G5EAU1_AQUCA; Uncharacterized protein
STRING	Aquca_010_00624.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-147	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G133900.1.p