PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G134000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 155aa    MW: 17561.6 Da    PI: 9.7413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G134000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-181968255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Aqcoe6G134000.1.p 19 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 68
                       69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1021976IPR001471AP2/ERF domain
SMARTSM003801.6E-361982IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-211977IPR016177DNA-binding domain
PfamPF008472.2E-112068IPR001471AP2/ERF domain
CDDcd000181.11E-272078No hitNo description
Gene3DG3DSA:3.30.730.103.3E-302077IPR001471AP2/ERF domain
PRINTSPR003671.2E-112031IPR001471AP2/ERF domain
PRINTSPR003671.2E-115878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MESREMKSKG SQRDNNNKPY RGIRMRKWGK WVAEIREPNK RSRIWLGSYS TPIAAARAYD  60
TAVFYLRGPT ARLNFPDLLL HDEDHQQQQN HHETLSSEFI RKKATEVGAR VDALETTGRG  120
IGVGGIHHHH NSCKAASKKP DLNQEPTLSS EDDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-151876463ATERF1
3gcc_A3e-151876463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600241.12e-58ethylene-responsive transcription factor ERF011-like
SwissprotQ8LC309e-50RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2G5EAU31e-112A0A2G5EAU3_AQUCA; Uncharacterized protein
STRINGAquca_010_00625.11e-113(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.11e-45related to AP2 10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]