PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G144700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 470aa    MW: 52862.4 Da    PI: 7.8813
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G144700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.2e-15104193299
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +k ++ps+v++  +l lp +f++++  k  ++ ++tl +e+g ++ vk+    ++ +  l++GW++F   ++L egD++vF+ +++++f  +
  Aqcoe6G144700.1.p 104 VKYMLPSHVSSCFWLGLPLDFCKSYLPK--QDEMITLISENGDEYPVKY--LAHKTG--LSGGWRGFSILHKLVEGDVLVFHIIKSTSF--K 187
                        58899********************533..5669***************..666655..9**********************9998888..8 PP

                        EEEE-S CS
                 B3  94 vkvfrk 99 
                        v ++r+
  Aqcoe6G144700.1.p 188 VYIIRE 193
                        888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-1996194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-2496194IPR015300DNA-binding pseudobarrel domain
CDDcd100174.36E-24101192No hitNo description
SMARTSM010191.3E-21103194IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534103194IPR003340B3 DNA binding domain
PfamPF023622.2E-13104193IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAKEEYLKLL KSKQDSDKDD DISVIHGLLA LPNLSQNPKV DSGHTKSTVI SNKRKQSYKD  60
DHVEKLTSQR RKRSHINTGK AQSCALKRAE EVRANLDPKF PILVKYMLPS HVSSCFWLGL  120
PLDFCKSYLP KQDEMITLIS ENGDEYPVKY LAHKTGLSGG WRGFSILHKL VEGDVLVFHI  180
IKSTSFKVYI IRENELADVD GALSLLDLDA RPKLVEPDNN AGKAAITTAK KFPTKKVTFI  240
LPEENDRSTS PPVSGLDIAL TSEQTGNDSE EVDSEVKLGI KLSESSVEFK NVTNLESFTV  300
RVNGLSIDSE IPKFVKTKYY DLCCSQNAFL HDHLPKVINC KLVAGIISET VNISDAIAAG  360
KLTTPQKELT IWDKSLIAFE QLGMNVGFLR TRLQQLMNLA RESEQAMDSK RYREALIRKS  420
QVEEEIRTTK SKLSELREAS KKFETEIEDL KVKAERYELR FQAEASAHW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15272KRKQSYKDDHVEKLTSQRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019055393.11e-134PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A2G5DS690.0A0A2G5DS69_AQUCA; Uncharacterized protein
STRINGAquca_015_00099.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-42B3 family protein