PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G144700.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 360aa    MW: 40394.3 Da    PI: 5.9709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G144700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.4e-15187599
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       ++ps+v++  +l lp +f++++  k  ++ ++tl +e+g ++ vk+    ++ +  l++GW++F   ++L egD++vF+ +++++f  +v ++r
  Aqcoe6G144700.2.p  1 MLPSHVSSCFWLGLPLDFCKSYLPK--QDEMITLISENGDEYPVKY--LAHKTG--LSGGWRGFSILHKLVEGDVLVFHIIKSTSF--KVYIIR 86
                       5799******************533..5669***************..666655..9**********************9998888..888887 PP

                       S CS
                 B3 99 k 99
                       +
  Aqcoe6G144700.2.p 87 E 87
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.506188IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-20188IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-18188IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16188IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-12187IPR003340B3 DNA binding domain
CDDcd100176.80E-23186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLPSHVSSCF WLGLPLDFCK SYLPKQDEMI TLISENGDEY PVKYLAHKTG LSGGWRGFSI  60
LHKLVEGDVL VFHIIKSTSF KVYIIRENEL ADVDGALSLL DLDARPKLVE PGKAAITTAK  120
KFPTKKVTFI LPEENDRSTS PPVSGLDIAL TSEQTGNDSE EVDSEVKLGI KLSESSVEFK  180
NVTNLESFTV RVNGLSIDSE IPKFVKTKYY DLCCSQNAFL HDHLPKVINC KLVAGIISET  240
VNISDAIAAG KLTTPQKELT IWDKSLIAFE QLGMNVGFLR TRLQQLMNLA RESEQAMDSK  300
RYREALIRKS QVEEEIRTTK SKLSELREAS KKFETEIEDL KVKAERYELR FQAEASAHW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803081.11e-122PREDICTED: B3 domain-containing protein Os01g0234100-like
RefseqXP_019055393.11e-122PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A2G5DS690.0A0A2G5DS69_AQUCA; Uncharacterized protein
STRINGAquca_015_00099.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-38B3 family protein