PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G144700.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 438aa    MW: 49629.2 Da    PI: 8.1445
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G144700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-1576165299
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +k ++ps+v++  +l lp +f++++  k  ++ ++tl +e+g ++ vk+    ++ +  l++GW++F   ++L egD++vF+ +++++f  +
  Aqcoe6G144700.3.p  76 VKYMLPSHVSSCFWLGLPLDFCKSYLPK--QDEMITLISENGDEYPVKY--LAHKTG--LSGGWRGFSILHKLVEGDVLVFHIIKSTSF--K 159
                        58899********************533..5669***************..666655..9**********************9998888..8 PP

                        EEEE-S CS
                 B3  94 vkvfrk 99 
                        v ++r+
  Aqcoe6G144700.3.p 160 VYIIRE 165
                        888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-2468166IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-1968166IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-2373164No hitNo description
PROSITE profilePS5086312.53475166IPR003340B3 DNA binding domain
SMARTSM010191.3E-2175166IPR003340B3 DNA binding domain
PfamPF023622.0E-1376165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MILFCPCSLH QFMTILFMYF LCSNKRKQSY KDDHVEKLTS QRRKRSHINT GKAQSCALKR  60
AEEVRANLDP KFPILVKYML PSHVSSCFWL GLPLDFCKSY LPKQDEMITL ISENGDEYPV  120
KYLAHKTGLS GGWRGFSILH KLVEGDVLVF HIIKSTSFKV YIIRENELAD VDGALSLLDL  180
DARPKLVEPG KAAITTAKKF PTKKVTFILP EENDRSTSPP VSGLDIALTS EQTGNDSEEV  240
DSEVKLGIKL SESSVEFKNV TNLESFTVRV NGLSIDSEIP KFVKTKYYDL CCSQNAFLHD  300
HLPKVINCKL VAGIISETVN ISDAIAAGKL TTPQKELTIW DKSLIAFEQL GMNVGFLRTR  360
LQQLMNLARE SEQAMDSKRY REALIRKSQV EEEIRTTKSK LSELREASKK FETEIEDLKV  420
KAERYELRFQ AEASAHW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12444KRKQSYKDDHVEKLTSQRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019055393.11e-135PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A2G5DS690.0A0A2G5DS69_AQUCA; Uncharacterized protein
STRINGAquca_015_00099.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-42B3 family protein