PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G147500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 265aa    MW: 29399.7 Da    PI: 4.812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G147500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192877255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Aqcoe6G147500.1.p 28 KFVGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 77
                       799******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-132877IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-212886IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-292885IPR001471AP2/ERF domain
SMARTSM003805.3E-362891IPR001471AP2/ERF domain
PROSITE profilePS5103220.7842885IPR001471AP2/ERF domain
CDDcd000187.05E-322884No hitNo description
PRINTSPR003675.0E-82940IPR001471AP2/ERF domain
PRINTSPR003675.0E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNPSSSSTSS KEKKSKKKQQ QQDETTVKFV GVRRRPWGRY AAEIRDPSTK ERHWLGTFDT  60
AEEAALAYDR AARSMRGSRA RTNFVYSDMP SGSSVTNIIS PDETSQHNKT HIAPPSQNQQ  120
TIPQFYLTED SGNVCDFSDR YPAAESWGQG SFCQQQQQPV SMDSGFGSQQ FYDGTGVPSL  180
GYDVSASYGS NSGYDMVQEL WSNDNTGYSN SEQLSTAFNP IKTSSYLDFD SSEYVHSPLF  240
GRMPPVSDFA SNDNNGFDSS SYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-202984359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250477.22e-89PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A2G5DT040.0A0A2G5DT04_AQUCA; Uncharacterized protein
STRINGAquca_015_00126.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-33ERF family protein