PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G155200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 357aa    MW: 41737.5 Da    PI: 9.7415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G155200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-057492220
                       EETTTTEEESSHHHHHHHH CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHi 20
                       +C+ Cg sF+ + +Lk+H+
  Aqcoe6G155200.1.p 74 TCEECGVSFRKPAHLKQHL 92
                       6*****************8 PP
2zf-C2H219.62.4e-06101125123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        + Cp  dC  s++r+++L+rH+  H
  Aqcoe6G155200.1.p 101 FACPvdDCQSSYKRQYHLNRHLLQH 125
                        78*******************9887 PP
3zf-C2H215.35.9e-05130155123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++C+   C ++Fs ++n+krH    H
  Aqcoe6G155200.1.p 130 FPCSvqGCERRFSYQDNMKRHVIElH 155
                        789999***************98766 PP
4zf-C2H220.41.4e-06167191123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp   Cgk+F+  s Lk+H +tH
  Aqcoe6G155200.1.p 167 HVCPnvGCGKVFKFASRLKKHEKTH 191
                        79**********************9 PP
5zf-C2H214.97.8e-05261280523
                        TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   5 dCgksFsrksnLkrHirt.H 23 
                         C  +FsrksnL++Hi+  H
  Aqcoe6G155200.1.p 261 GCVHTFSRKSNLNQHIKAvH 280
                        6899************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551702851IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.89E-872125No hitNo description
SMARTSM003550.077395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.88473100IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-47491IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-992127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0088101125IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182101130IPR007087Zinc finger, C2H2
PROSITE patternPS000280103125IPR007087Zinc finger, C2H2
SuperFamilySSF576676.24E-6111158No hitNo description
Gene3DG3DSA:3.30.160.609.9E-6128151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0054130155IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64130160IPR007087Zinc finger, C2H2
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
SuperFamilySSF576673.49E-5160193No hitNo description
Gene3DG3DSA:3.30.160.603.4E-7164191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803167196IPR007087Zinc finger, C2H2
SMARTSM003550.0039167191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169191IPR007087Zinc finger, C2H2
SMARTSM003550.22199224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
SMARTSM0035513227248IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.1E-4240277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.868250285IPR007087Zinc finger, C2H2
SMARTSM0035541258280IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.16E-8265308No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4279308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035551286315IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MELMEVGGEL EGEEKKIKLP ILKEIRRYYC DYCCICRSKK SIITSHILSK HKEEMEGEKE  60
KCNSKGKKVT KSNTCEECGV SFRKPAHLKQ HLQCHSLERH FACPVDDCQS SYKRQYHLNR  120
HLLQHQGKLF PCSVQGCERR FSYQDNMKRH VIELHGRIKS ALSQNQHVCP NVGCGKVFKF  180
ASRLKKHEKT HVKTNFLEAI CSEPGCWKSF SNVEILKVHL QSCHQYIHCK VCGTKQLKKN  240
IKRHMRVHEI GCSSQRINFE GCVHTFSRKS NLNQHIKAVH LELRPFVCRY DGCGDRFSYK  300
HVRNNHEKSW MILKHLMSNF DFRSRLKDMQ KRKYPIGQMQ LMERVTPSGQ ADFALC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-157721919155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-157721919155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.11e-142PREDICTED: transcription factor IIIA
RefseqXP_010251839.11e-142PREDICTED: transcription factor IIIA
RefseqXP_010251840.11e-142PREDICTED: transcription factor IIIA
RefseqXP_010251841.11e-142PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-97TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G5F7C61e-159A0A2G5F7C6_AQUCA; Uncharacterized protein
STRINGAquca_002_01327.11e-160(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-87transcription factor IIIA