PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G157000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

ZF-HD

Protein Properties

Length: 244aa MW: 25947.8 Da PI: 7.3418

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G157000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.6	6.3e-33	58	111	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +Y+eClkNhA+ +GghavDGCgEfmp+ geeg+ +alkCaAC+CHRnFHR+e+ Aqcoe6G157000.1.p 58 QKYRECLKNHAVGIGGHAVDGCGEFMPA-GEEGSLDALKCAACNCHRNFHRKETP 111 68***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-23	57	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.2E-30	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-30	59	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.963	60	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.86E-21	167	241	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-33	168	242	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.2E-25	180	236	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDFDDDHEEQ DEEIGMPVSA SYGNSSAATA KMVISSSGGG GSGDGGLGGR KSLVVVGQKY 60 RECLKNHAVG IGGHAVDGCG EFMPAGEEGS LDALKCAACN CHRNFHRKET PEGVDGVYNH 120 HQFSQYYRAP TGYLQVAQHR QPTLALPSTS GGGAAGSGDQ DEDMSGPSGG GGMGGGSSSK 180 KRFRTKFTQE QKDKMLAFAE KLGWRIQKHD EAAVQQFCTE TCVKRHVLKV WMHNNKHTLG 240 KKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-27	179	238	16	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	176	SGPSGGGGMGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266504.1	1e-111	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	A2YWA6	1e-84	ZHD2_ORYSI; Zinc-finger homeodomain protein 2
Swissprot	Q6ZB90	1e-84	ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBL	A0A2G5DSK7	1e-178	A0A2G5DSK7_AQUCA; Uncharacterized protein
STRING	Aquca_015_00208.1	1e-179	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	8e-69	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Aqcoe6G157000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]