PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G161700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25220.7 Da    PI: 9.6789
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G161700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.6e-241563149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       krie +  rqvtfskRr+g++KKA+EL++LC+a +++i+fs+ gk++ +
  Aqcoe6G161700.1.p 15 KRIEQEDSRQVTFSKRRAGLFKKASELCILCGAHASIIVFSPAGKVFSF 63
                       79********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-35766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.277767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-29779IPR002100Transcription factor, MADS-box
CDDcd002653.68E-39879No hitNo description
PRINTSPR004043.3E-21929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251663IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-212944IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-214465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRKPSMGRQ KIEIKRIEQE DSRQVTFSKR RAGLFKKASE LCILCGAHAS IIVFSPAGKV  60
FSFVHPSVEA VVDRYLSGSP ATDVVSGGTV SLLDAHRGVN QRELTRQHTE LVYQFEAEKK  120
KGEQQQQLKK ANQQNVPWWE GPIENLGLHE LERIQYHMGQ LKSRVANGIS QAAFFPQMSI  180
MNSIEMPDHY ETKPNPNNSA MVPRAYGFAY GGYGGFDRGL TGGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16775169MEF2C
5f28_B8e-16775169MEF2C
5f28_C8e-16775169MEF2C
5f28_D8e-16775169MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802310.0JX680231.1 Aquilegia coerulea MADS-box protein AGL70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277267.11e-65PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLK7X0J71e-168K7X0J7_AQUCA; MADS-box protein AGL70
STRINGAquca_015_00242.11e-169(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-35AGAMOUS-like 62