PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G165500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 396aa    MW: 44559.9 Da    PI: 6.1563
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G165500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.35.9e-53231511128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyfFs+rd+ky+tg r+nrat++gyWkatgkdke+
  Aqcoe6G165500.1.p  23 LPPGFRFHPTDEELVTFYLASKVFNGSFCG-VEIAEVDLNRCEPWELPDIAKIGEREWYFFSSRDRKYPTGLRTNRATEAGYWKATGKDKEI 113
                        79*************************877.45***************8888899************************************* PP

                NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+   + l g+kktLvfykgrap+gekt+Wvmheyrl
  Aqcoe6G165500.1.p 114 YSAssPSILLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 151
                        **85555669**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-6312175IPR003441NAC domain
PROSITE profilePS5100559.15323175IPR003441NAC domain
PfamPF023652.2E-2824151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMMFGMEDIL CEMYGENTNE QGLPPGFRFH PTDEELVTFY LASKVFNGSF CGVEIAEVDL  60
NRCEPWELPD IAKIGEREWY FFSSRDRKYP TGLRTNRATE AGYWKATGKD KEIYSASSPS  120
ILLGMKKTLV FYKGRAPRGE KTKWVMHEYR LVGDNNSSRH TAAKDEWVIC RIQHKHSGGD  180
HKKTHLSHLH NYLLKSTSFS SFSTSLPPLF DSQAALLEPE PSTQPLQIQN HPHNPTHQEI  240
TDFKALANPG GSQTSNHLFP NMDFQPSYVP CSLTSNTNPS PSSILLKTLL SHQECSWNEQ  300
YKETNFSHIQ QTDANMNWMD KMQQEETIQA IPSLCFEMHG CSSTGIWGFS TSAENPSGGS  360
SVHELSTSLS MNRAGFQMML DPLFTGSIEY GPLDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-522317720170NAC domain-containing protein 19
3swm_B6e-522317720170NAC domain-containing protein 19
3swm_C6e-522317720170NAC domain-containing protein 19
3swm_D6e-522317720170NAC domain-containing protein 19
3swp_A6e-522317720170NAC domain-containing protein 19
3swp_B6e-522317720170NAC domain-containing protein 19
3swp_C6e-522317720170NAC domain-containing protein 19
3swp_D6e-522317720170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270533.11e-142PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8513e-95NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2G5DSX80.0A0A2G5DSX8_AQUCA; Uncharacterized protein
STRINGAquca_015_00272.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-95NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]