PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G179000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 211aa    MW: 24522.2 Da    PI: 4.4904
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G179000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.5e-192170249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                       +ie    r+vtf+kRr+g++KKA+ L++LC+a++ +i+fs+  ++++y++
  Aqcoe6G179000.1.p 21 KIEKRESRNVTFCKRRQGLFKKASTLCTLCNANIGIIVFSPsaKNNVYTF 70
                       799999*********************************98335778888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-241273IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-241289IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.1091272IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-141434IPR002100Transcription factor, MADS-box
PfamPF003191.1E-202170IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-143449IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-144970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MPKISRKKER DMGKRRIAIE KIEKRESRNV TFCKRRQGLF KKASTLCTLC NANIGIIVFS  60
PSAKNNVYTF GNPSVDKLID RFYNNQNNNS LVAVEEESSE NERGLLWWDN IDFSNFDSME  120
KLKRLETDLM DVKQKVQNQL EKLINGSSSS PPPSQEEEEE SECWLWPSNE DTDTLLNNFD  180
FSEQVASVSK EENQEDEELF FDINQYFNYS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802240.0JX680224.1 Aquilegia coerulea MADS-box protein AGL63 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DBK81e-151A0A2G5DBK8_AQUCA; Uncharacterized protein
STRINGAquca_024_00131.11e-151(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-25AGAMOUS-like 61