PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G204400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 750aa    MW: 85635.2 Da    PI: 8.7397
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G204400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.51e-1863156290
               FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                        fY+eY+++ GFs+r+++  ++ + ++ it+  +vCs+eg +++++ k    + + r++++ r++Cka+++v+k+k ++ +evt +e+ H+H 
  Aqcoe6G204400.1.p  63 FYREYGRQKGFSTRIRTIDRKqHGSNMITSCLLVCSCEGVHNRKEVKfggISGKPRNTSTVRCECKASMRVTKRKfEEIYEVTMVENTHSHG 154
                        9**************99887725566788999*********999999999888999999****************9***************9 PP

               FAR1  89 la 90 
                        l+
  Aqcoe6G204400.1.p 155 LV 156
                        97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1563156IPR004330FAR1 DNA binding domain
PfamPF105513.7E-33272365IPR018289MULE transposase domain
PROSITE profilePS509668.988529565IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-4537562IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MELSKDDGVN NLEPIDLSGD DGEPNKCCNI GSPSNVTPKK DISKVETPHR GMTFKTVDDA  60
KTFYREYGRQ KGFSTRIRTI DRKQHGSNMI TSCLLVCSCE GVHNRKEVKF GGISGKPRNT  120
STVRCECKAS MRVTKRKFEE IYEVTMVENT HSHGLVSPCK RMNMRANKCM PEAAKKLTMV  180
FHDEGLPVAK VVSVFCGDTI GFTAKDCHNH FGSTRKKPKE GDATSVFHYF EKMSAEDPQF  240
YYAIQSDAKG RAVNFFWVDG RSQMQYEYFG DVVSFDTTYR TNAYKMPFAP FTGVNHHLMS  300
IQFGCGFLLD ETEGTFVWLF KTWLAAMGGR PPTSMITDQD KAMTSAVARV FPNTSHRHCL  360
WHITNKFPEK LAHVMHVNEN FSEELKLIIS GSYRTYDFER KWNEHMGIYE ARRTWVPAYH  420
LDTFFAGMNT TGRSELMNSY YDMFLKPTTT LSDFVYSIDK TEHSSRIVGK DDFLLKHAGK  480
VYTINAFGKF KSQWDKAKGV YKIDKEEGGD NGFNTYTLKS RNINNPNFWK VIFNTSTLQG  540
ECECKYFSFM GLPCGHLLKV FWRHDIDQIP DHFIMRRWTQ KANTYRAMFE GGLVDGHETS  600
EALRLTHGCR LATQLAFDAS THDEIYKYLV EKFDELSIEI AKRKETLNKS ANSKVASNQV  660
SEELSIVDPS QVLLLNSNIS QTKGMRKEKN KASDSGRIKR GIEISQEKKG RRCSCCQKVV  720
NHDLRTCPNN PNRKKKTTCA NDDHYPEES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021815267.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A251PRW60.0A0A251PRW6_PRUPE; Uncharacterized protein
TrEMBLA0A251QDD00.0A0A251QDD0_PRUPE; Uncharacterized protein
STRINGXP_008219733.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-105FAR1-related sequence 5