PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G214800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 335aa    MW: 38418.9 Da    PI: 9.4319
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G214800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06173192120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C+k+Fsr  n++ H+
  Aqcoe6G214800.1.p 173 FSCPVCDKTFSRYNNMQMHM 192
                        89*****************9 PP
2zf-C2H217.21.5e-05257279123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C +CgksF  k + ++H +++
  Aqcoe6G214800.1.p 257 FSCRKCGKSFAVKGDWRTHEKNC 279
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.29E-6169195No hitNo description
Gene3DG3DSA:3.30.160.606.4E-7173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367173200IPR007087Zinc finger, C2H2
PfamPF139124.3E-4173192IPR007087Zinc finger, C2H2
SMARTSM003550.025173195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SMARTSM00355230220252IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.49E-6243277No hitNo description
Gene3DG3DSA:3.30.160.605.1E-6243277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.891257277IPR007087Zinc finger, C2H2
SMARTSM0035534257277IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSLVYIFLNK GNYQSVKMGI RNYHEYNKLE LVLQAPSFVE WLTPPATSLS SSSPSSKLQQ  60
THYTSSMKFL KLPLFYQNDQ DELLEKKNKC LPLLNSFNES LKQEKIINDE NLGERFTVAL  120
HIGLPNNDSF DGETKLPVSY KDEKKSIKKS SLNSESRFWI PTPAQILLGP TQFSCPVCDK  180
TFSRYNNMQM HMWGHGSQYR RGPDSLKGTQ PTAMLKLPCY CCAHGCKNNI NHPRAKPLKD  240
FRTLQTHYKR KHGAKPFSCR KCGKSFAVKG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH  300
VRSFGDDHSP HPCHQSLEDQ KECITGSEDE IRSK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071029.11e-144zinc finger protein WIP3-like
SwissprotQ9SGD11e-117ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2G5EP510.0A0A2G5EP51_AQUCA; Uncharacterized protein
STRINGAquca_006_00227.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-115WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]