PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G226900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 881aa MW: 101145 Da PI: 8.0626

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G226900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.6	2.3e-19	89	176	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn YA+++GF++rk+ s++sk + +i ++t +C +eg+ ++ k+ r+r+ r gC a+++vk+ k+gk+e+ k+ eH+H+l+p Aqcoe6G226900.1.p 89 NFYNGYARMMGFNTRKKGSNRSKADrSKILRYTVCCACEGSYTKIKTP----TRRREDRRFGCMAQFTVKLIKSGKYELVKFIAEHTHDLVP 176 6**************9999965516799*******9998777....889999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-16	89	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-26	281	375	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.421	562	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-5	573	600	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.3E-4	575	597	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MNHHNSNETI ISNCNSRMDN EGSEVQDHIS VEDSDDFAGS PDMDLGSNDD LFCGMEVNRR 60 GGNGLGDKST DAVDPQIGME FNSIKEAYNF YNGYARMMGF NTRKKGSNRS KADRSKILRY 120 TVCCACEGSY TKIKTPTRRR EDRRFGCMAQ FTVKLIKSGK YELVKFIAEH THDLVPLSSA 180 QILRLHRDVK TLHDITYFCE EDGGAEYVKF NKSDSSNLIQ RRRADILKRE DVLFLLDYFR 240 AKKRENRHFS YSFRTNDETE ICGVFFCDAT SRRDYGLFGD IISFDTTFGL KNYNMICTLF 300 VGVNNHGQTT LFGCGLVDSE RTDSFVWLFN TFLEAMGGRQ PKTIFTGQGA VIENAIGIVF 360 PDSHHRLCLR IIHQNALKNL NKVFSEFKSF TERFKECIYE GETIEEFELT WAALIKDFNL 420 EGNEWLQGLY DMRENWAQVY AHVHFCADMP TIERSESINE DLKMFFGTKV NLRESVNQYG 480 KAIASRRHKE REEFKRNRET EPILLSNWSV EREATTIYTR KMFKFFQEEY KKTLDLRMRL 540 DKVDGDVNTY IVEYLGSQRR NHTLTYHQSE KSVLCTCRKF EFQGILCSHT LKLFRDLNFL 600 SLPSRYYMKR WTKSVIDEVV FDSYGEAIRN EIDPLSMTRY KELSYISQII VAKGAKSNAL 660 CSLAKSELLQ VEAKLDALAV TEDERAQSSG SRGDSSSVLD KDAPLRESKR TKIHSQSKKE 720 VEGVKETKAA KRTSSKQKGD GEKSASATKQ IKERDNSANK PTKDSSEVAH ALTNQQSYNH 780 NPSIMGLASN VYQPVQEHFV LAQGSTHQHS FNQIQNQVPS FQGIFPPYPF LRYPEVNGSS 840 VVSYNHPRDQ RNRFILPRLP TSQWASTSQT NNFKDQHSCN *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MNHHNSNETI ISNCNSRMDN EGSEVQDHIS VEDSDDFAGS PDMDLGSNDD LFCGMEVNRR  60
GGNGLGDKST DAVDPQIGME FNSIKEAYNF YNGYARMMGF NTRKKGSNRS KADRSKILRY  120
TVCCACEGSY TKIKTPTRRR EDRRFGCMAQ FTVKLIKSGK YELVKFIAEH THDLVPLSSA  180
QILRLHRDVK TLHDITYFCE EDGGAEYVKF NKSDSSNLIQ RRRADILKRE DVLFLLDYFR  240
AKKRENRHFS YSFRTNDETE ICGVFFCDAT SRRDYGLFGD IISFDTTFGL KNYNMICTLF  300
VGVNNHGQTT LFGCGLVDSE RTDSFVWLFN TFLEAMGGRQ PKTIFTGQGA VIENAIGIVF  360
PDSHHRLCLR IIHQNALKNL NKVFSEFKSF TERFKECIYE GETIEEFELT WAALIKDFNL  420
EGNEWLQGLY DMRENWAQVY AHVHFCADMP TIERSESINE DLKMFFGTKV NLRESVNQYG  480
KAIASRRHKE REEFKRNRET EPILLSNWSV EREATTIYTR KMFKFFQEEY KKTLDLRMRL  540
DKVDGDVNTY IVEYLGSQRR NHTLTYHQSE KSVLCTCRKF EFQGILCSHT LKLFRDLNFL  600
SLPSRYYMKR WTKSVIDEVV FDSYGEAIRN EIDPLSMTRY KELSYISQII VAKGAKSNAL  660
CSLAKSELLQ VEAKLDALAV TEDERAQSSG SRGDSSSVLD KDAPLRESKR TKIHSQSKKE  720
VEGVKETKAA KRTSSKQKGD GEKSASATKQ IKERDNSANK PTKDSSEVAH ALTNQQSYNH  780
NPSIMGLASN VYQPVQEHFV LAQGSTHQHS FNQIQNQVPS FQGIFPPYPF LRYPEVNGSS  840
VVSYNHPRDQ RNRFILPRLP TSQWASTSQT NNFKDQHSCN *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A200PMW3	0.0	A0A200PMW3_9MAGN; FAR1 DNA binding domain

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-118	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe6G226900.1.p