PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G242600.6.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 361aa MW: 40740.1 Da PI: 6.8304

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G242600.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.3	2e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skRr+gilKKA ELS+LCd+++a+++fs+tgk Aqcoe6G242600.6.p 9 KRLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGK 53 789****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.567	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.8E-32	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.36E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.0E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.6E-21	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.0E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.0E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGRVKLKIKR LENTSGRQVT YSKRRAGILK KARELSILCD IDIALLMFSP TGKPTLCLGE 60 RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGNS TQTVEDLTNQ 120 SRLLEAQLSE MHKRLSCWTE PEKINNIEHL RAMEDNLKDS LNRIRIHKDT FGKPQLIPLE 180 CTSSQFQNSI HLPLGMGGEQ QAQNMTWIPH NGGQHLMFSG DPNLLHQRID VACALFRDME 240 CSTDASVPSY SGYYGEGKHA EIDCSGQNGG AFHELNGNAC LRLQLNGQLP LQQYGLNILF 300 DKNKSELKMN VQEPPLDYQG GNSFEPPRHG YDINHPSWES NSVPCPNDIF DEHTFPQQNS 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGRVKLKIKR LENTSGRQVT YSKRRAGILK KARELSILCD IDIALLMFSP TGKPTLCLGE  60
RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGNS TQTVEDLTNQ  120
SRLLEAQLSE MHKRLSCWTE PEKINNIEHL RAMEDNLKDS LNRIRIHKDT FGKPQLIPLE  180
CTSSQFQNSI HLPLGMGGEQ QAQNMTWIPH NGGQHLMFSG DPNLLHQRID VACALFRDME  240
CSTDASVPSY SGYYGEGKHA EIDCSGQNGG AFHELNGNAC LRLQLNGQLP LQQYGLNILF  300
DKNKSELKMN VQEPPLDYQG GNSFEPPRHG YDINHPSWES NSVPCPNDIF DEHTFPQQNS  360
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-13	1	96	1	94	MEF2C
5f28_B	2e-13	1	96	1	94	MEF2C
5f28_C	2e-13	1	96	1	94	MEF2C
5f28_D	2e-13	1	96	1	94	MEF2C
6byy_A	2e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	2e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	2e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	2e-13	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX680226	0.0	JX680226.1 Aquilegia coerulea MADS-box protein AGL65 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258315.1	1e-168	PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-102	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2G5F405	0.0	A0A2G5F405_AQUCA; Uncharacterized protein
STRING	Aquca_002_00641.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-105	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Aqcoe6G242600.6.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]