PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G242900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 1238aa    MW: 140985 Da    PI: 7.6316
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G242900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.84.3e-2473194290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................................tekerrtraetrt 60 
                        fYneYA  vGFsvrk+k++ks+ +g+   r+f+Cskeg++++++++                                  +k+ +  ++ r+
  Aqcoe6G242900.1.p  73 FYNEYAAIVGFSVRKDKTRKSNVDGSYLFRRFCCSKEGYPRNNRDNvnqgfvqirdgvavkvelrippvprlsrrakieMKKRAEVLQKMRV 164
                        9*****************************************9999*****************************9986555666678889* PP

               FAR1  61 gCkaklkvkkekdgkwevtkleleHnHela 90 
                        gC+akl vk+ ++gkw v+k+++eHnHe++
  Aqcoe6G242900.1.p 165 GCNAKLDVKRGSNGKWIVQKFVEEHNHECV 194
                        ***************************986 PP
2FAR1804.2e-25255355289
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                        fYn+YA+ +GF vrk+k++ks+ +g+   r+f+Cs+eg+r++++++              + + r  ++tr+gC+ak++vk+++dgkw v+k
  Aqcoe6G242900.1.p 255 FYNAYARVLGFIVRKDKTRKSNIDGSLLFRRFCCSREGYRRTNNENdnneskqvrgcgvVKVRPRILPVTRVGCNAKMEVKRNSDGKWLVQK 346
                        9****************************************9999988888888888766666678899*********************** PP

               FAR1  81 leleHnHel 89 
                        + +eHnHe+
  Aqcoe6G242900.1.p 347 FIEEHNHEF 355
                        *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2173194IPR004330FAR1 DNA binding domain
PfamPF031013.6E-22255355IPR004330FAR1 DNA binding domain
PfamPF105514.5E-23478571IPR018289MULE transposase domain
PROSITE profilePS5096610.633758796IPR007527Zinc finger, SWIM-type
PfamPF044344.2E-7770794IPR007527Zinc finger, SWIM-type
SMARTSM005755.2E-4771798IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:3.30.420.101.7E-811061226IPR012337Ribonuclease H-like domain
PfamPF134562.1E-1411081221No hitNo description
CDDcd062221.17E-2111111220No hitNo description
SuperFamilySSF530981.39E-1111111225IPR012337Ribonuclease H-like domain
PROSITE profilePS5087911.52911141224IPR002156Ribonuclease H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1238 aa     Download sequence    Send to blast
MEMESTTSQF DSLVTDSSEL FEAVGVESRD KPVSHSQTRQ NFNDFSSTTT TTTTTTKPYV  60
EMEFDSLHEA FLFYNEYAAI VGFSVRKDKT RKSNVDGSYL FRRFCCSKEG YPRNNRDNVN  120
QGFVQIRDGV AVKVELRIPP VPRLSRRAKI EMKKRAEVLQ KMRVGCNAKL DVKRGSNGKW  180
IVQKFVEEHN HECVSLGETH LLRSHRGRHI THGQNTNNDG GELPSADELH SYIELNCVVP  240
SVGMEFESHH KAFLFYNAYA RVLGFIVRKD KTRKSNIDGS LLFRRFCCSR EGYRRTNNEN  300
DNNESKQVRG CGVVKVRPRI LPVTRVGCNA KMEVKRNSDG KWLVQKFIEE HNHEFDRLGD  360
LNLLRSEKQT HSTQGQVDDI LTEEGATKKK LIPSLLREAS GCEKVMSGKP RFRNRFSKKR  420
KKKLEKGDLQ VLFNYFRQMK TENPSFFYAV QVDDDDQMLN CFWADAQSRL DFGYFGDVIN  480
FETSYGTSHY GRPFAPIVGV NHHLQTVFFG CAIVLYECEE SYTWLLETFL KAMRGNRPVR  540
IITDQDEEMV KAIDRVLPGT HHCLSLRYIF QSTAKHLSHL YYSEVDFGTD FKRCVYESGT  600
PDEFETKWAS LLGQYELCNN EWLDNIYNKR HKWVPLYSKH TFQADMMTSQ RSEIIHSLFD  660
DYLNRALPFV DFLNQYEKAL IDSREKETYE DLKSHQTRHV LKTDLPMEKQ AADSYSRALF  720
KEFHKEFCDS FSHNAVETDT LDTNRTFLVS RWGQNNSSTV NFSSHANEIC VSCSCLYFEF  780
MGILCRHILK VFTTTNVMLV PEAYLKKRWT KRAKWGVVLG DSNKQKQTDY QDSVPFHYRE  840
LCHLALNISA KGAISLKAYQ IAKSKIIAKL REIEKDDGED AQTSICQNDI SGIRISRAPV  900
EVIENTSHYE QILSEDNHML STASQVGFYD PPHVRARGRP PKRITQSLGD SQSSKKARTA  960
PDTSDNLMPS VSRREVPEPK DPCHVGGVGV QETQSHRLLN MCPNICVYTC PPGLTGDLND  1020
QYHSSENAAF GEPFAALPCI QDPEQNIFDL NQDVTVGPSN LSCSQMSHSD LNQINNVARP  1080
SDSWLLPSSG WFKLNFGGTS KEVCLGSTRR RIAGFGGTVS VSDGSVIKAY AGPAGEVEAV  1140
DSELIALYNG LKILSTLPSS PVWIEGDSQL VIKWLRKDSD IPWGFTLQFI EIESIISRLI  1200
LGRITHVHRE GNSMADKLAN EGLTKNSLTT WNQMPNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410421RFRNRFSKKRKK
2417421KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026393730.10.0protein FAR1-RELATED SEQUENCE 7-like isoform X3
TrEMBLA0A2G5EN910.0A0A2G5EN91_AQUCA; Uncharacterized protein
STRINGAquca_006_00169.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-140FAR1-related sequence 5