PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G244200.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family BBR-BPC
Protein Properties Length: 344aa    MW: 38059.3 Da    PI: 9.6784
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G244200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind371.12e-11313431301
          GAGA_bind   1 mdddgsre..rnkg.yye.........paaslken..lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 
                        mdd+g+re  r+k+ +y+         p + +k++  ++++ ms++aerda+i+ernla+sekkaa+ erdma +qr++a+aern+al+erd
  Aqcoe6G244200.2.p   1 MDDSGQREngRHKPdQYKslhsqwmipP-HLMKDHhaMTMKFMSILAERDAAIQERNLAVSEKKAALVERDMAIMQREAAIAERNNALMERD 91 
                        99***99999********9**9999854.466665337899*************************************************** PP

          GAGA_bind  79 nkllalllvensla.....salpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
                        n+++al++++ +++     s++ +g+++  gtk+++++q++++ ++l++ +++ r+ ++++a+pi+ aa+ea + ++ k+++ ak  ++kka
  Aqcoe6G244200.2.p  92 NAIAALEYRDSATVngstaSTCQPGCGIPCGTKHMHHHQHVHHpSHLNEAPYNSRDINISDAFPISAAASEAVKPRRAKRTKDAKALQSKKA 183
                        ********998877888889999*****************999789*****************************99999999988888888 PP

          GAGA_bind 165 kkkkkksekskkkvkkesader.......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233
                         k  kk++  +++++++    +                       sk ++  +dl+ln+v +D+s++PvP CsCtG+l+qCYkWG GGWqSa
  Aqcoe6G244200.2.p 184 FKLSKKGKRGNDDTNRQVPFAKplewkseqcmggggedmskqlavSKPDWIGQDLGLNQVPFDDSAMPVPGCSCTGVLQQCYKWGKGGWQSA 275
                        8877777666666665553334677999**************************************************************** PP

          GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        CCttt+S+yPLPv++++r+aR++grKmS++af+klL++La+eG+dls+p+DLkdhWA+HGtn+++ti+
  Aqcoe6G244200.2.p 276 CCTTTLSMYPLPVMPNKRHARLGGRKMSGSAFSKLLSRLASEGHDLSTPLDLKDHWARHGTNRYITIK 343
                        *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.6E-961343IPR010409GAGA-binding transcriptional activator
SMARTSM012268.6E-1561343IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDDSGQRENG RHKPDQYKSL HSQWMIPPHL MKDHHAMTMK FMSILAERDA AIQERNLAVS  60
EKKAALVERD MAIMQREAAI AERNNALMER DNAIAALEYR DSATVNGSTA STCQPGCGIP  120
CGTKHMHHHQ HVHHPSHLNE APYNSRDINI SDAFPISAAA SEAVKPRRAK RTKDAKALQS  180
KKAFKLSKKG KRGNDDTNRQ VPFAKPLEWK SEQCMGGGGE DMSKQLAVSK PDWIGQDLGL  240
NQVPFDDSAM PVPGCSCTGV LQQCYKWGKG GWQSACCTTT LSMYPLPVMP NKRHARLGGR  300
KMSGSAFSKL LSRLASEGHD LSTPLDLKDH WARHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263912.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263913.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263915.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263916.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263917.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263918.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263919.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263920.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263921.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263922.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263924.11e-167PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ5VSA81e-120BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A2G5EN890.0A0A2G5EN89_AQUCA; Uncharacterized protein
STRINGAquca_006_00158.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-116basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]