PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G248700.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family DBB
Protein Properties Length: 208aa    MW: 23062 Da    PI: 5.3578
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G248700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.1e-07430531
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedCll 31
                        C+ +e+  ++lfC  ++  lC++C +
  Aqcoe6G248700.3.p  4 LCDVCESAAATLFCAADEAALCPSCDD 30
                       7************************86 PP
2zf-B_box25.82.2e-085291237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       e ++C+ +e+ +  ++Ce +++ lC +C +  H g    H
  Aqcoe6G248700.3.p 52 EVPRCDICENAPPFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                       789***************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.129147IPR000315B-box-type zinc finger
SMARTSM003360.0095147IPR000315B-box-type zinc finger
CDDcd000217.21E-5329No hitNo description
PROSITE profilePS501198.6885196IPR000315B-box-type zinc finger
SMARTSM003361.1E-95196IPR000315B-box-type zinc finger
PfamPF006431.6E-65285IPR000315B-box-type zinc finger
CDDcd000219.35E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRTLCDVCES AAATLFCAAD EAALCPSCDD KVDLCNKLAR PHVRVGLAAP NEVPRCDICE  60
NAPPFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR IQFPGDKAGP IEEQGMQPMD  120
QGVIRREQNE PPKLTTKENM RVSPVPESNA KNEEHRKIEN NMIDLNTKPN RTHGEVSNDK  180
EMDTTNRSSH KSADVVPYGY FDGEAQN*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626783.13e-98B-box zinc finger protein 19-like isoform X2
RefseqXP_021626785.13e-98B-box zinc finger protein 19-like isoform X2
RefseqXP_021626786.13e-98B-box zinc finger protein 19-like isoform X2
RefseqXP_021626787.13e-98B-box zinc finger protein 19-like isoform X2
SwissprotC0SVM58e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A251JTQ97e-97A0A251JTQ9_MANES; Uncharacterized protein
STRINGcassava4.1_016111m1e-96(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-75DBB family protein