PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G257100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25508.9 Da    PI: 7.6335
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G257100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849.2e-27958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien +nrqvt+skRr+gilKKA+EL vLCda+va+i+fs+t+kl ++ 
  Aqcoe6G257100.1.p  9 KRIENPTNRQVTYSKRRAGILKKAKELNVLCDAQVALIMFSTTDKLTDFV 58
                       79********************************************9996 PP
2K-box70.26.6e-24711711100
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhll.GedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                        yq++sg++l+++++e++q+ l+k k+ +++L++e+ +++ GedL++Ls++eL  Leq+Le+s+k + ++K   +++q+e+++kk k+l+e +
  Aqcoe6G257100.1.p  71 YQQASGTNLWNSHYEKMQEALKKQKETNRKLRKEIGQRVgGEDLSDLSFEELCGLEQHLESSVKIVAQRKFTQITTQTETSKKKIKSLEEMH 162
                        8999****************************999777637*************************************************** PP

              K-box  92 kaLrkklee 100
                        ++L +++ee
  Aqcoe6G257100.1.p 163 NNLLHEYEE 171
                        ****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.23161IPR002100Transcription factor, MADS-box
CDDcd002651.54E-37280No hitNo description
SuperFamilySSF554553.66E-36295IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-1482169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.98784175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKR IENPTNRQVT YSKRRAGILK KAKELNVLCD AQVALIMFST TDKLTDFVSP  60
NTTMKKTFDM YQQASGTNLW NSHYEKMQEA LKKQKETNRK LRKEIGQRVG GEDLSDLSFE  120
ELCGLEQHLE SSVKIVAQRK FTQITTQTET SKKKIKSLEE MHNNLLHEYE ERLEEEYALA  180
DHEGLSALEM AANGASHVFA FRLQPSQPNL HGDGGCGFED LRLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-16173171MEF2C
5f28_B1e-16173171MEF2C
5f28_C1e-16173171MEF2C
5f28_D1e-16173171MEF2C
6byy_A1e-16175173MEF2 CHIMERA
6byy_B1e-16175173MEF2 CHIMERA
6byy_C1e-16175173MEF2 CHIMERA
6byy_D1e-16175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4894780.0EF489478.1 Aquilegia vulgaris MADS transcription factor AP3-1 (AP3-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271509.17e-91PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J27e-89TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2G5EMW01e-166A0A2G5EMW0_AQUCA; Uncharacterized protein
STRINGAquca_006_00074.11e-167(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]