PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G257300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 26357.5 Da PI: 8.0809

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G257300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.8	5e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRr+gi KKA+EL vLCdaev+++++sst k++ey+s Aqcoe6G257300.1.p 9 KRIENSTNRQVTYSKRRAGIVKKAKELTVLCDAEVSLLMVSSTEKIHEYIS 59 79***********************************************86 PP
2	K-box	82.2	1.2e-27	71	170	1	100
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 yq++sg++l++ ++e++q l+kLk+ +++L++e+R++ GedL++Ls+++L+ Leq++eks++ +R++K + + +++++ +kk k+++e+++ Aqcoe6G257300.1.p 71 YQQASGSNLWQPHYERMQDTLQKLKEVNNKLRKEIRQRNGEDLDELSFQQLRGLEQNMEKSVECVRNRKFHQISTSTDTYKKKIKNHEETHN 162 8999************************************************************************************** PP K-box 93 aLrkklee 100 +L +++ee Aqcoe6G257300.1.p 163 SLLREFEE 170 **9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.0E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.357	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.02E-39	2	80	No hit	No description
SuperFamily	SSF55455	4.32E-36	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-21	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	5.1E-18	82	168	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.851	84	174	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRAGIVK KAKELTVLCD AEVSLLMVSS TEKIHEYISP 60 SCTHKNLYDR YQQASGSNLW QPHYERMQDT LQKLKEVNNK LRKEIRQRNG EDLDELSFQQ 120 LRGLEQNMEK SVECVRNRKF HQISTSTDTY KKKIKNHEET HNSLLREFEE RDADFSFPAL 180 DFEGDYQSTI GFANGNPHIF AFRLQPKLQS DLQDEEAYGS YGLSLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-15	1	59	1	59	MEF2C
5f28_B	1e-15	1	59	1	59	MEF2C
5f28_C	1e-15	1	59	1	59	MEF2C
5f28_D	1e-15	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF489477	0.0	EF489477.1 Aquilegia vulgaris MADS transcription factor AP3-2 (AP3-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263856.1	1e-102	PREDICTED: floral homeotic protein DEFICIENS isoform X1
Swissprot	Q003J2	2e-91	TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBL	A0A2G5EMU6	1e-169	A0A2G5EMU6_AQUCA; Uncharacterized protein
STRING	Aquca_006_00072.1	1e-169	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-66	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G257300.1.p

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]