PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G257900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SRS
Protein Properties Length: 322aa    MW: 34509.9 Da    PI: 8.3377
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G257900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.16.5e-70992553154
             DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalss 88 
                        +g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaa+rrerqqql+++++++++++      +++++kr re+   ++s+l++
  Aqcoe6G257900.1.p  99 VGGKSCQDCGNQAKKDCVHMRCRTCCKSRGFQCSTHVKSTWVPAARRRERQQQLQSLQQQQQQQHqllqhhHHQNPKRLREN--PSSSSLAC 188
                        6789****************************************************99999888778854333444444443..33333444 PP

             DUF702  89 tkls.saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        t+++   ++++ le+ ++P+ev+s+avfrcvrvs+++d+e+e+aYqtav+igGhvfkG+LydqG e+
  Aqcoe6G257900.1.p 189 TTTTrLPSTTTGLEVGNFPSEVNSQAVFRCVRVSGMNDAEDEYAYQTAVNIGGHVFKGLLYDQGSED 255
                        33330344566789999***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.6E-68101254IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.9E-28103145IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-26206252IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGFSLGSGG GGGGGNPSSD IPPESFFLYR NEEIAAFNTS KGFELWQQHL QRQQRYHQEI  60
YSSADVSDES SSRGAAANIG HVSMMMRSQG ASGSGGGSVG GKSCQDCGNQ AKKDCVHMRC  120
RTCCKSRGFQ CSTHVKSTWV PAARRRERQQ QLQSLQQQQQ QQHQLLQHHH HQNPKRLREN  180
PSSSSLACTT TTRLPSTTTG LEVGNFPSEV NSQAVFRCVR VSGMNDAEDE YAYQTAVNIG  240
GHVFKGLLYD QGSEDRYVPG ESSSGGGGRH LIAGTTAATN TTAANTSNAA ASLLDPSSSQ  300
LYPAPLTAFM AGTQFFPHPR S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9550053e-43CR955005.2 Medicago truncatula chromosome 5 clone mte1-58c24, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271515.11e-115PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotK4B6C94e-76EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
SwissprotQ9SD405e-76SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A2G5EMS90.0A0A2G5EMS9_AQUCA; Uncharacterized protein
STRINGAquca_006_00068.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-61Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]