PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G276000.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 297aa    MW: 32356.6 Da    PI: 4.6183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G276000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.4e-09556147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                       +++WT eE+  l  +++++G g W+ I +          R+  ++k++++++
  Aqcoe6G276000.2.p  5 KQKWTSEEEAALQAGITKHGAGKWRMILKDPEfssilSLRSNVDLKDKYRNL 56
                       79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-14272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-11456IPR009057Homeodomain-like
SMARTSM007170.0012459IPR001005SANT/Myb domain
PROSITE profilePS500906.783557IPR017877Myb-like domain
CDDcd116607.36E-18656No hitNo description
SMARTSM005264.1E-11115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.025117185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.09E-14118190IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.1E-14122188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.5E-8124183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALQAGI TKHGAGKWRM ILKDPEFSSI LSLRSNVDLK DKYRNLSVIA  60
NGWTSRQSRK RSLDFMKHDE SPLAITEVVQ RDEDIVDVEP LDTAPGFLQI SDDSNDSISR  120
LDILVLEAIT NLKEPRGSNK TNIAIYIEDQ YDAPPNFNQI LASTLTNLTT SGKLIKVNGK  180
YRIAPNAAFS EVGNTGMPLL EGRQMDSCNA EKVKMQILTQ SQVDAELAKM RNMNAQEAAA  240
AAARAVAEAE IAMAEAEEAA KEAEVAEADA EAAQAFAEVA MATLKNRNTP NLMIFA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263289.11e-106PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_010263290.11e-106PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-74TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2G5CDL00.0A0A2G5CDL0_AQUCA; Uncharacterized protein
STRINGAquca_060_00026.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.37e-75telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]