PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G281600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 586aa    MW: 68220.8 Da    PI: 8.8657
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G281600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR196.33.4e-30999190
               FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                       +fYn+YA ++GFs+rks++++s+ + ei+ rtf+Cs eg r+++ k+ e++ r+ra trtgCka ++v+k++ +++w+v+k+ ++HnH+l+
  Aqcoe6G281600.1.p  9 NFYNRYAANMGFSIRKSTTNRSRITSEIIGRTFCCSLEGMRDPRAKAVEERIRNRADTRTGCKAIMVVRKKRkEKTWRVSKVIENHNHALV 99
                       6**********************************************9*********************999899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-27999IPR004330FAR1 DNA binding domain
PfamPF105513.2E-30194288IPR018289MULE transposase domain
PROSITE profilePS509669.817475511IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-7486507IPR007527Zinc finger, SWIM-type
SMARTSM005755.4E-8486513IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
FNSHEEAYNF YNRYAANMGF SIRKSTTNRS RITSEIIGRT FCCSLEGMRD PRAKAVEERI  60
RNRADTRTGC KAIMVVRKKR KEKTWRVSKV IENHNHALVT PSKRHRLRSQ RSVGSTQGHI  120
MDNMLTAGIR TNLMVSFLAS EAGDAQAVLD HLRQQQMENP AFFYTIQIDS EGRMTNFLWA  180
DARSRMDYHY FGDVVCFDPT YGTNKYNMPF VPIVGINHHY QTVLFGGALL YSETEEAFVW  240
VMKSWMVAMD GKQPKIILTD QESAIGGAIK QVLPGTRHYY CSWHIGRNAM KHLAHEINSQ  300
PDFFSDFNKC IYDYETIPEF QSCWDAMIKK YNLEENNWLI NLFEKREKWA SVYRRDIFCG  360
GMTTTQRSES INSYFDKYLK KGMPLWEFMK QYERAVVDRH EEENNADYDT IHSNQVLRFS  420
MKIEKEASNI YTKAIFKKFQ EQLILGLSYR HKKVEDDGIA FVYKVWMEGY EYKARTVIFE  480
PSTTNVKCSC QMFDFSGYLC RHALKIFVVE DVQNLPEQYI LKRWTREAKS GSTVFTKDEG  540
TRLKLKESVA LRYSKLCQDG VHIASKASHS DVVFEVALKG FDDTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681RKKRKE
27682RKKRKEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245238.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_010245239.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_010245240.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U7YXG20.0A0A1U7YXG2_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010245238.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-149FAR1-related sequence 5