PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G282100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 237aa    MW: 26743.6 Da    PI: 9.1275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G282100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-065191853
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                        Er+RR+r+ + +  Lr l+P+      +K +K ++L  A  Y+++
  Aqcoe6G282100.1.p 51 SERNRRKRLTKQLLSLRALVPHI-----TKIDKRSVLVDALSYLRN 91
                       6*********************7.....6**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3824392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.57E-44697No hitNo description
SuperFamilySSF474592.36E-1147110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-949106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-44998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNPSGDVEMS EPMVTTANAT ESNKSTDEDY DDGTNEDPPK PGTLNSKNMV SERNRRKRLT  60
KQLLSLRALV PHITKIDKRS VLVDALSYLR NIHEETERLQ KELKEQQPGL KLSDLRESSQ  120
DNPSGTFRIP RITSASVAYP KSKVQITEID VEKIEHKRFI VKVTCKGCAG VGNDVLRVFE  180
SLDFEITYTA LQQLQPQEVL VTIFVRVRKQ GKMTEQKLKD CITRMALRTG LNLQSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2538611e-32AC253861.1 Aquilegia coerulea clone COL08-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249626.15e-72PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A2G5F9R51e-171A0A2G5F9R5_AQUCA; Uncharacterized protein
STRINGAquca_001_00271.11e-172(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.24e-22bHLH family protein