PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G288600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 191aa MW: 21738.3 Da PI: 5.267

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G288600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.1	8.4e-12	5	40	9	44
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 r+v+f R++g+ KK EL +LCda+++++if +++ Aqcoe6G288600.1.p 5 RNVSFKTRKEGLKKKIRELTTLCDAQACMLIFHPKQ 40 89******************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0056	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-13	4	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-11	5	40	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.124	5	36	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MLKPRNVSFK TRKEGLKKKI RELTTLCDAQ ACMLIFHPKQ TETIHHHHYP EPEIWPEKLE 60 DFNKVITRYK NTTGSSSSNN NNNNNNSNQE EDTSVAAVIK KMQNNNNYFN LEACSKQQLE 120 GILQKIDFNI EIVNQLLNPP PPPLDQVPLL LYSSDYDYDY DFGNCYFSDS AGDYTTMGAG 180 ATDSLVNFMC *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CPJ5	1e-140	A0A2G5CPJ5_AQUCA; Uncharacterized protein
STRING	Aquca_042_00134.1	1e-141	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	2e-12	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Aqcoe6G288600.1.p