PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G289800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 248aa MW: 27889.5 Da PI: 6.3871

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G289800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.5	1.3e-11	14	49	9	44
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 r+v+f R++g+ KK EL +LCda+++++if +++ Aqcoe6G289800.1.p 14 RNVSFKTRKEGLKKKIRELTTLCDAQACMLIFHPKQ 49 89******************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0023	1	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.28E-13	13	87	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.124	14	45	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-11	14	49	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGSSGGDLAM LKPRNVSFKT RKEGLKKKIR ELTTLCDAQA CMLIFHPKQT ETIHHHHYPE 60 PEIWPEKLED FNKVITRYKN TTGSSSSNNN NSNQEEDTSV AAVIKKMQNN NNNNNNYFNL 120 EACSKQQLEG ILQKIDFNIE IVNQLLNPPP PPLDQVPLLY SSDYDYDYDF GNCYFSDSAG 180 DYTTMGAGAT DSLNCLPNSM HALCIPVYPI LHPRVGRGIQ NLSLVPMEKI LPYYLLISNN 240 SRGCYFA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CPJ5	9e-95	A0A2G5CPJ5_AQUCA; Uncharacterized protein
STRING	Aquca_042_00134.1	1e-95	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	2e-10	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Aqcoe6G289800.1.p