PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G299200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 295aa    MW: 33963.4 Da    PI: 9.69
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G299200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.9e-131994990
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                       dv++ +   +pkkf++++g+    s +++l+      W+v+l  rk +g   +++GWkeFv+   +++g  +vF+++++s+f
  Aqcoe6G299200.1.p 19 DVFTMQ--GIPKKFLTRYGKY--MSNDVVLKVCGCMAWRVEL--RKADGFACFQNGWKEFVEHYSICAGHYLVFRYNRKSQF 94
                       555554..7*********855..6779***************..********************************988877 PP
2B331.63e-10172260191
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        ffk+++++++ + +   +p+ f +++  +    +   l+ + ++g ++W v + y  ++    ++kG + F  +n+++ gD++ F+l+++++
  Aqcoe6G299200.1.p 172 FFKITMQPSYVNARYWLIPRIFSDKYlpE----GLESLSHQVPNGkNKWVVGC-YLYRGTDLRMSKGLSLFMLENNIQIGDVCYFELIKKKN 258
                        778777777777777999*****999542....334688888888799****9.666666799************************98655 PP

                        E. CS
                 B3  90 fe 91 
                          
  Aqcoe6G299200.1.p 259 VV 260
                        53 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.9E-517102IPR003340B3 DNA binding domain
PfamPF023628.1E-102094IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-1823102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-1624109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-92699No hitNo description
PROSITE profilePS5086310.94126102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-13166263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-13168263IPR015300DNA-binding pseudobarrel domain
CDDcd100178.05E-9171263No hitNo description
PROSITE profilePS508638.12172269IPR003340B3 DNA binding domain
SMARTSM010190.012172267IPR003340B3 DNA binding domain
PfamPF023621.5E-8172261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLNYMGLTGS LRHITIFLDV FTMQGIPKKF LTRYGKYMSN DVVLKVCGCM AWRVELRKAD  60
GFACFQNGWK EFVEHYSICA GHYLVFRYNR KSQFGVIIFG LSGNEIDYSR SSNNLGEFNH  120
AKHAPLPENE GGDGNNGDDS SGRDLMTRRL VKTEERKVAI QITSPFMSKY PFFKITMQPS  180
YVNARYWLIP RIFSDKYLPE GLESLSHQVP NGKNKWVVGC YLYRGTDLRM SKGLSLFMLE  240
NNIQIGDVCY FELIKKKNVV LKVMYMTPFY VNSRYMLINK KDHVLKVTIA SQES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1614827324144B3 domain-containing transcription factor VRN1
4i1k_B7e-1614827324144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DIM10.0A0A2G5DIM1_AQUCA; Uncharacterized protein
STRINGAquca_019_00028.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-20B3 family protein