PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G303600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 234aa MW: 25453.6 Da PI: 10.3322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G303600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	112	157	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r r R +++ ++++ L++l+ + +K + a++L +A+ YI+ L Aqcoe6G303600.1.p 112 TKTVRVRVRKEKLGDRIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 157 56788899****************8.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-12	108	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.678	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.01E-5	111	162	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-8	112	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0041	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MATTKEEFAK NPISSMGNFI YPSSITTTFP SGNVPTMLCF NTNSENQKYR VLNGSESLSG 60 SSSNNSSSSS TITKSKRSRA GKGNTEQETK NLGSVESKKT IKKTKTGNPT STKTVRVRVR 120 KEKLGDRIAA LQQLVSPFGK TDTASVLHEA MGYIRFLHDQ VQVLSSPYLQ GLPSSNNFIQ 180 DARGEEEVKR RYDLKSRGLC LVPIECTTQV ASSNGADFWS PATMGSNILN LKH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271336.1	1e-63	PREDICTED: transcription factor bHLH113
Swissprot	Q9LT67	1e-45	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A2G5C6X2	1e-171	A0A2G5C6X2_AQUCA; Uncharacterized protein
STRING	Aquca_083_00015.1	1e-172	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G303600.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]