PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G312400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 236aa    MW: 26237.2 Da    PI: 10.1586
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G312400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31162220259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK+++gs++pr+YYrC+s  +Cp++k+ver+++++k++++tYegeHnh+
  Aqcoe6G312400.1.p 162 SDDFSWRKYGQKSIQGSPHPRGYYRCSSVkNCPARKQVERASDEGKMLIVTYEGEHNHS 220
                        69*************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-10112158IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.8E-32152221IPR003657WRKY domain
PROSITE profilePS5081128.564156222IPR003657WRKY domain
SuperFamilySSF1182901.44E-26158220IPR003657WRKY domain
SMARTSM007741.5E-37161221IPR003657WRKY domain
PfamPF031061.6E-27163219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTMNLLTDYN NINPKIEMES KDVVDVSVSD DFKKMISLLS RTRVGHARFR RAPPSPTHLS  60
LSSPSCLEQI PQEMITTEKK ELTISKLPPL PPLTRTISFT SQPLSSSSSS LKRKCYSSND  120
TIVKCRSVGS SGGCNCSKRR KRGVKKVVKI PLISLKMAEI PSDDFSWRKY GQKSIQGSPH  180
PRGYYRCSSV KNCPARKQVE RASDEGKMLI VTYEGEHNHS QAVSETITIN ILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21149219271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312942.11e-66probable WRKY transcription factor 7
SwissprotO221761e-59WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A2G5C8M81e-171A0A2G5C8M8_AQUCA; Uncharacterized protein
STRINGAquca_083_00093.11e-172(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.19e-43WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]