PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G312600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 267aa    MW: 30137.7 Da    PI: 4.8361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G312600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-163584255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr++  +g+WvAeIr+p   + r +r +lg+f t +eAa  ++  +++l+g
  Aqcoe6G312600.1.p 35 TYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSYEAALVYDTVARSLYG 84
                       69****999.**********8...3.35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.75E-273492No hitNo description
PfamPF008472.6E-103584IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-183592IPR016177DNA-binding domain
PROSITE profilePS5103220.5343592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-283593IPR001471AP2/ERF domain
SMARTSM003805.1E-313598IPR001471AP2/ERF domain
PRINTSPR003674.8E-93647IPR001471AP2/ERF domain
PRINTSPR003674.8E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEKETKEKKM KKSSQRSSRR GCMRGKGGPQ NSQCTYRGVR QRTWGKWVAE IREPNRGARL  60
WLGTFNTSYE AALVYDTVAR SLYGSSAKLN LPQIQQHHPL DSNSNNIPSS THCPRTNLET  120
TKPEPYSPIP VPNIPIPEQA CPSSSIEESN SSCNSGIFFP NFSEEIKENM DQEVNYPLDE  180
LWGSLDLGLP DIDESLSIKA PSPVIPLIMD DYDSIMMMDT YPKISSTNLD DGLNWDSLQL  240
PYIPHEEDHH QPSKQVFAEE VEDLYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-183692360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-41ERF family protein