PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G314500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 725aa    MW: 83614.2 Da    PI: 7.5935
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G314500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.82.6e-1168144291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g          + gk ++ +k+   +++ r  tr++C a +++  ++  + w v  + ++HnH lap
  Aqcoe6G314500.1.p  68 FYNEYAKIKGFSVRKDHKTVI--DG---------VRAGKWTNLHKR---RKKARRLTRCNCPAAMNIVYDDeLNIWTVRGFMSQHNHVLAP 144
                        9**************985554..55.........678888877666...788999************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-868144IPR004330FAR1 DNA binding domain
PfamPF105519.7E-36253347IPR018289MULE transposase domain
PROSITE profilePS5096610.806532568IPR007527Zinc finger, SWIM-type
SMARTSM005757.3E-8543570IPR006564Zinc finger, PMZ-type
PfamPF044342.3E-6544566IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRNADF LHRVGLRLQD EIHDDMGEIS DEDMLRARFN  60
TDEDAYFFYN EYAKIKGFSV RKDHKTVIDG VRAGKWTNLH KRRKKARRLT RCNCPAAMNI  120
VYDDELNIWT VRGFMSQHNH VLAPPGGSHF LRSHRKVSLS NPVLAQNLYA LGESKKLVMD  180
IFISKDLYNQ MNRARVERIL DGDANLVNSF LEDMNVYDPG FFKKIQVNEK KHLTKLFWSD  240
SQSQEDYKLF GDVLMFDSTY RTNRYDMPLV VFAGVNNHRH TVIYALALMN NETIDSYEWA  300
LKTFLVAMDG IAPKSVITDG DAAIRNAIEN VFPKSKHRLC VWHVVQNAIT NVWTDGFVKG  360
FVEAMFCKGP PDAFEKKWAE LLIEYKTVAE QKWVHNIYEK KEMWAEAYLR EYLFAGCRSN  420
QRCESINSVV RVCVKSGLSL IELVDKLLQK IRHIRYRDFE AEVNTTMTRS AQIPNLTLIG  480
EQAEALYTRA GYEYFFKQLL HEPSYVVNES YDDGEDIIKY LVNRHMHPNA PATVEYNREK  540
DAYNCTCKLF EIVGFLCRHI LAVLKHTHVK ALPKSCILHR WIREAKSSSL DFGTNPTTSC  600
RLGFGLRLKE LEEYSRDLFM WGCESVQRCT MVKGHIAAFD KGEPEEVAQG FDETPVPENP  660
LGFEEEPVAS TPPQSFPPDN IVDPQRDLGR RGGPRKAKRK MFHQRTSTRC GICHIVGHSR  720
RTKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-90FAR1-related sequence 5