PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G323800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 226aa MW: 25865.5 Da PI: 10.3034

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G323800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.9	3.9e-18	128	217	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k +++s+v+ +l lp++f+++h ++++k+ tl de+g +W + k++ l++GW++F a++L +gD +vF+l++ ++f Aqcoe6G323800.1.p 128 FVKPMLQSHVTGGFWLGLPRSFCRKHL--PRSDKEFTLIDEDGGEWYTLFLAAKNG----LSGGWRGFSIAHELVDGDALVFELVEPTKF-- 211 89**********************5..457789***********556665....9********************9876777.. PP EEEEE- CS B3 93 vvkvfr 98 +v+++r Aqcoe6G323800.1.p 212 KVHIVR 217 888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.43E-25	122	219	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.9E-21	122	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.38E-26	126	217	No hit	No description
PROSITE profile	PS50863	13.704	128	219	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-25	128	219	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-15	128	217	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVKASTTSYE ELRQKRMEEN KKRMEELNLT KLALAVRNAS PKLSAQVKPR SARKAVTPVE 60 VRRSSRNSGK PTPVYKEVRM DIQERPRRYY KTHRDLSNRV YADYESRVDA TERAEDIESK 120 LENGFPSFVK PMLQSHVTGG FWLGLPRSFC RKHLPRSDKE FTLIDEDGGE WYTLFLAAKN 180 GLSGGWRGFS IAHELVDGDA LVFELVEPTK FKVHIVRVNG PKNHT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269220.1	1e-88	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	5e-70	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2G5C5Z4	1e-155	A0A2G5C5Z4_AQUCA; Uncharacterized protein
STRING	Aquca_095_00007.1	1e-156	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-61	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G323800.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]