PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G325100.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 737aa    MW: 83663 Da    PI: 6.4797
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G325100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.14.6e-3185175291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        fYn+YA+++GFs+r s+ ++s+r+g+i++r+ vCs++g++ ++++  ++k++r+ra +r+gCka+++vkk+++g+w+v+kl+++HnHel+p
  Aqcoe6G325100.2.p  85 FYNSYARRIGFSIRASTYHRSRRDGSIICRQIVCSRQGFHLTRDRGsKNKQKRPRAIERVGCKAMIVVKKQDSGRWVVSKLVKDHNHELVP 175
                        9**************************************99988875788999************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2985175IPR004330FAR1 DNA binding domain
PfamPF105513.6E-29295383IPR018289MULE transposase domain
PfamPF044341.7E-10563609IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.127575611IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-8586613IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MDFDIGSGEE EDDEPIVDVD VDIEHPDEDN YDVDGYVDGD YEDDDMSMIQ QTSIGRDFVS  60
SDLDNPPLEP YEAMEFESEE ASRIFYNSYA RRIGFSIRAS TYHRSRRDGS IICRQIVCSR  120
QGFHLTRDRG SKNKQKRPRA IERVGCKAMI VVKKQDSGRW VVSKLVKDHN HELVPPDKVH  180
RLRSHRHVSG TARSLIDTLQ AAGIGPTGVM NVLAKESGGF KNVGFSTVDC RNYITNRQRT  240
LGTGGQHVLD YLRRMQAENP TFVYAIQGDN EHSAGNIFWA DATSMTNYNY FGDTVTFDTT  300
YRTNRYRVPF APFTGLNHHG HPVLFGCALL LNESETSFIW LFETWLAVMS GRHPVSITTD  360
QDRIIQSAIA HVFPDTRHRF CKLNVFREAQ EKLSAVYHMH PTFEADFRKC INTTETIEEF  420
ESCWGSLLER YSVVHNEWLQ SLYIARQKWV PVYLRDTFFG EMSTTQSTDS VISFFDGYVN  480
ASTTIQVLVK QYEKAVASRH EKEVKADYDT INTAPVLKTP SPIEKQAAGI YTRSIFIRFQ  540
EELVETLAIT ATKIEDTGTI TTYRVAKFGE DHKSYIVNFH VFEMDANCSC KKFEFSGIIC  600
RHILAVFRVT NFFTLPSHYI LKRWTRNAKS GVVVDERALE LPTTSRESSI DRFNNLRQEA  660
IKYVDEGAKS SHVYNVAMDA LKEAAKKVAA AKKQGPGLPL VGTLVNGSNQ DVQVCEADRL  720
DPLQLSSTDS FSKIKN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026394812.10.0protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2G5C4R80.0A0A2G5C4R8_AQUCA; Uncharacterized protein
STRINGAquca_095_00021.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]