PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G325800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 321aa    MW: 37081.9 Da    PI: 8.5429
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G325800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.7e-085071526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C+f++r G C+ GdrC++ H+
  Aqcoe6G325800.1.p 50 RCPFYSRIGVCRNGDRCSRTHD 71
                       7*****************9886 PP
2zf-CCCH19.81.4e-06180201425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        ++Cr f +   C++G+ C+F+H
  Aqcoe6G325800.1.p 180 ANCRQFEEENKCHRGGYCNFIH 201
                        58******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1974573IPR000571Zinc finger, CCCH-type
SMARTSM003560.454872IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-54971IPR000571Zinc finger, CCCH-type
PRINTSPR018481.0E-485170IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.0E-487090IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3304.7E-2177173IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.18377174IPR000504RNA recognition motif domain
SMARTSM003618.1E-595170IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018481.0E-48103118IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549283.12E-15106174IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018481.0E-48131153IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.0E-48158182IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.361176204IPR000571Zinc finger, CCCH-type
SMARTSM003567.3177203IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4180201IPR000571Zinc finger, CCCH-type
PRINTSPR018481.0E-48194206IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMMMMMRTNE QQQQQLSSTS SSSYNIMMFR DRDRDRDNIG GSITTTTSSR CPFYSRIGVC  60
RNGDRCSRTH DRPSISPTLL FTNMYHQRPR DINDNDDDPS MIQEIFEDFY EDIFEELAKF  120
GDIQNLVVCD NISPHMLGNV YVKFKEEHQA VAAFIAFNGR LYCGQPIVAE FSPVWDFPNA  180
NCRQFEEENK CHRGGYCNFI HAKNIGRALR RKLFGGGTRN PRDRSVSPYF NNNNNNRTSS  240
SYLVDRQQRG GGVGVGGGNY YANGRQSADR DAARSSYDNN QRDRRQHDNR SYRTASPVRE  300
SSEERRAKIE QWNREKEARQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A7e-465121318179Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654952.14e-88splicing factor U2af 38 kDa subunit isoform X1
RefseqXP_020397717.14e-88splicing factor U2af 38 kDa subunit isoform X1
RefseqXP_020397718.14e-88splicing factor U2af 38 kDa subunit isoform X1
SwissprotQ9ZQW84e-80U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLA0A2G5C6310.0A0A2G5C631_AQUCA; Uncharacterized protein
STRINGAquca_095_00029.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.13e-20C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]