PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G000100.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 712aa    MW: 78953.3 Da    PI: 7.3028
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G000100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.1e-162468147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r rWT eE+ ++++a+k++G   W +I +++g ++t+ q++s+ qk+
  Aqcoe7G000100.3.p 24 RERWTVEEHHRFLEAIKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                       78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-161874IPR009057Homeodomain-like
PROSITE profilePS5129420.491973IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-82170IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-152271IPR006447Myb domain, plants
SMARTSM007172.5E-112371IPR001005SANT/Myb domain
PfamPF002497.3E-132467IPR001005SANT/Myb domain
CDDcd001674.19E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MDTFSSNQDL ITKARKPYTI TKQRERWTVE EHHRFLEAIK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEREALIEG VPLGKGRDIH IPPPRPKRKP NTPYPRKTGA GTPNSIPVGV  120
KDVNLLNSSS SSYSTKQIQD LDNDLHFEKP CKRTRAKEYF DDANSSAFLT LSQETPCDSL  180
SPSSKSPQAS VVLANQCVFR NFIPSVKETS GADMDYGVSE DPKVTKCFHN LNEDVIKGAN  240
VKQPENLCLL TKEETRSNQN YPRHIPVHVL ESNSETCTQC SEHDMTCPSS IIHQAERPFS  300
KVNNFANPTA SATTECHSSI SIQQSLSSFP SLLNPFSNRD SYSMFVNPTF SNLIVSTLLQ  360
NPAAHAAASF AASFWPFSNM ETPVDSPLCS FEGFQSRHGD LSPSTSAIAV ATVMAASAWW  420
AANGILPMRP LPLHTGLNFA PIIPSQTDTI EKEKSDHRIL FSPCEGQQLD PGLSKALESK  480
VPDTKLPPLS LSDCNKSGNT RSSNAEVEAA SHKQKSLSLA ALQEADKGKS KEQVDRSSCG  540
SNTPSSSEVE MDLLEKHTNG KDEFNDQIIN NWTSEPNNHR NRSAGNMNEF WREVSEEGKI  600
AFKALFSREV LPQSFTPLKC LGNHGQLIKS NEDGLHKSDE KGEDKLQPYL NSKTFLIQLD  660
CRERDKQESL SEGSSDKGLL SMEYGHGKVR ARRAGFKPYK RYCGQGEQGG E*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661511.11e-172PREDICTED: protein LHY isoform X3
RefseqXP_010661512.11e-172PREDICTED: protein LHY isoform X3
RefseqXP_019081159.11e-172PREDICTED: protein LHY isoform X3
RefseqXP_019081160.11e-172PREDICTED: protein LHY isoform X3
TrEMBLA0A2G5DYZ30.0A0A2G5DYZ3_AQUCA; Uncharacterized protein
STRINGAquca_013_00001.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.37e-66MYB_related family protein