PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G007400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 711aa    MW: 78907.1 Da    PI: 5.9622
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G007400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-22136236198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +k+a+e        ++  + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   
  Aqcoe7G007400.1.p 136 FCKILTASDTSTHGGFSVLRKHANESlppldmtQS--TPTQDLIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL-- 223
                        99*********************999****96544..44558************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++ l+v+v+r
  Aqcoe7G007400.1.p 224 RGENGDLRVGVRR 236
                        3488889***998 PP
2Auxin_resp104.71.1e-34262341183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st++ F v+Y+Pr+  s+F+++++k+++a+++ ++vGmRfkm+fe+eds+err++Gt+vg+ d++p +W++SkWrsLk
  Aqcoe7G007400.1.p 262 ASHAVSTQTLFIVYYKPRT--SQFIISLNKYLEAVDHGFTVGMRFKMRFEGEDSPERRFTGTIVGTGDISP-QWKDSKWRSLK 341
                        789***************6..9***********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-38127265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-38130251IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-19134236No hitNo description
PROSITE profilePS5086311.914136238IPR003340B3 DNA binding domain
PfamPF023622.9E-20136236IPR003340B3 DNA binding domain
SMARTSM010193.7E-20136238IPR003340B3 DNA binding domain
PfamPF065073.5E-32262341IPR010525Auxin response factor
SuperFamilySSF542772.06E-11589671No hitNo description
PfamPF023097.8E-6592631IPR033389AUX/IAA domain
PROSITE profilePS5174525.629595676IPR000270PB1 domain
PfamPF023093.0E-5641679IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MAYSDNYRGS SISQSNFSGD RLETGFGVDE LYTELWKACA GPLVDVPRTG ERVFYFPQGH  60
MEQLEASTNQ ELSQRIPLFN LPSKILCRVV HIQLLAEQES DEVYAQITLQ PEPDQNEPNS  120
PDPIPQELPR PVVHSFCKIL TASDTSTHGG FSVLRKHANE SLPPLDMTQS TPTQDLIAKD  180
LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGENGDL RVGVRRLARQ  240
PSCMPSSVIS SQSMHLGVLA TASHAVSTQT LFIVYYKPRT SQFIISLNKY LEAVDHGFTV  300
GMRFKMRFEG EDSPERRFTG TIVGTGDISP QWKDSKWRSL KVQWDELASI QRPERVCPWE  360
IEPFVASAPP SNVIQSTIIK NKRPRQSVDN PVCDTSSAAS AFWYPKSNLS HDLVALSGPE  420
VQSSESQVVW PPRQKEGNLF NNSSTCSSKN LLDGGWPSPL TKASLNLFQD VNVDDKTVPL  480
WGVLGISGND QAPKPIDFPV INDPVETGKK PEPTGGCRLF GIELTNNSRA PPPVNVPTNQ  540
TVISSAGTEE VVQAPVFGAN SNQQSGVSKV SGEQGREFLQ VSPKESQTKG PTCTRTRTKV  600
HMQGIAVGRA VDLTGLQGYD QLIKELEDMF EIKGQLCPRD KWEVVFTDDE GDMMLVGDDP  660
WLEFCKMVKK IYIYLSQDVK KMTTGIKLPS SSLEDEGTVI SLDSELKKET *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1692536413355Auxin response factor 1
4ldw_A1e-1692536413355Auxin response factor 1
4ldw_B1e-1692536413355Auxin response factor 1
4ldx_A1e-1692536413355Auxin response factor 1
4ldx_B1e-1692536413355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266558.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2G5DZM00.0A0A2G5DZM0_AQUCA; Auxin response factor
STRINGAquca_013_00067.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]