PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G007900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 616aa    MW: 68463.7 Da    PI: 6.2657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G007900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12453499455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Aqcoe7G007900.1.p 453 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 499
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5752241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831449498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.73E-15452503No hitNo description
SuperFamilySSF474592.75E-18452513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18453512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10453499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16455504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00798560604No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKEEGLMGDG FWNEEDKAMV ITALGVQAFE YLMTSTVSSE CLVTTGGSDP NLQYKLSELV  60
ESPKASNFSW NYAIFWQISR SKSGELFLGW GDGYCREPKE GEESEPTFLV NGRLQEEETQ  120
QNMRKRVLQK LNTYFGGSEE ENYAIELDRV TDTEMFFLTS MYFSFPQGEG APGKAYRSGK  180
HVWLSNALKC STDYCVRSFL ARSAGIQTII LIPTDTGVVE LGSVRSIPEN LEVLQRIRSI  240
FSRVSSHVPV SPISVVSGIN ENATVPSYGT REAPDECHKI FGQDLNLGGS QLNEKLLAPK  300
VEFRPWDMFS NGNRLQFANN RKGPQGLSWP PNRGLKPATT LGAYASQPSA NSQHKFGNGS  360
IVLSNNLDHA HQSVGHGNAF SQRNHFQPPK QLPMQIDFSG GMTSRAPVGR SNAVDSEQSD  420
IEACKEDQSS PADERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS  480
KMDKASLLGD AITYITDLQK KLKDMESEKE NAGNPSREAV TSEINSASEN DKQAPNIDIQ  540
ALHDELIVRV SCPIDTHPAS KVIQAFREAQ VTVLESKIST GNDTVFHTFV VKPRESDLLT  600
KDKLIATFSR ETNNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28447519274Transcription factor MYC2
5gnj_B1e-28447519274Transcription factor MYC2
5gnj_E1e-28447519274Transcription factor MYC2
5gnj_F1e-28447519274Transcription factor MYC2
5gnj_G1e-28447519274Transcription factor MYC2
5gnj_I1e-28447519274Transcription factor MYC2
5gnj_M1e-28447519274Transcription factor MYC2
5gnj_N1e-28447519274Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434442RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242396.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242398.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242399.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_019051449.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1U7YTE80.0A0A1U7YTE8_NELNU; transcription factor bHLH13-like
STRINGXP_010242395.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-176bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]