PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G017600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 254aa    MW: 28375.9 Da    PI: 10.3688
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G017600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.5e-214393155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       s+y+GVr  k  grWvAeIrd+     +  +rf+lg+f taeeAa+a+++a+ +++g
  Aqcoe7G017600.1.p 43 SKYRGVR-EKPPGRWVAEIRDC-----KakRRFWLGTFNTAEEAARAYDEAAIRIHG 93
                       89****9.6669*********4.....235************************997 PP
2AP250.16.9e-16175224255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +grWv eIr p+    + r +lg+f+ aeeAaka+ +a  +++g
  Aqcoe7G017600.1.p 175 KYRGVRQRS-WGRWVLEIRNPYA---KSRLWLGTFDIAEEAAKAYHEAVIRIHG 224
                        8*****999.**********853...4*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-1943100IPR016177DNA-binding domain
PfamPF008477.8E-154393IPR001471AP2/ERF domain
CDDcd000187.91E-304399No hitNo description
SMARTSM003801.8E-3244107IPR001471AP2/ERF domain
PROSITE profilePS5103220.62644101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2644100IPR001471AP2/ERF domain
PfamPF008473.4E-9175223IPR001471AP2/ERF domain
SMARTSM003801.2E-27175238IPR001471AP2/ERF domain
CDDcd000189.89E-26175230No hitNo description
SuperFamilySSF541714.58E-17175231IPR016177DNA-binding domain
PROSITE profilePS5103220.178175232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-26175231IPR001471AP2/ERF domain
PRINTSPR003672.7E-10176187IPR001471AP2/ERF domain
PRINTSPR003672.7E-10198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPQIDRISDS SSDDDKEEIH LFSSGGGGGG GGVRNITEIK IKSKYRGVRE KPPGRWVAEI  60
RDCKAKRRFW LGTFNTAEEA ARAYDEAAIR IHGVNAKTNL IIPPPISTSD SITATYNNTH  120
QEEDQPPTSR LQTSPPPPLS RLQRQKTKTK LIPPLISTFP PPSPPQSRLQ TSKHKYRGVR  180
QRSWGRWVLE IRNPYAKSRL WLGTFDIAEE AAKAYHEAVI RIHGVNAKTN LIQPPTSTSS  240
SPITYNESQS QDW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13431001371Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.15e-21ERF family protein