PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G023800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 208aa    MW: 23436.4 Da    PI: 9.4442
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G023800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32128186159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+v+r ++d++++++tYeg Hnh+
  Aqcoe7G023800.1.p 128 LDDGYRWRKYGQKSVKNSLHPRSYYRCTHHTCNVKKQVQRLSKDTSIIVTTYEGIHNHP 186
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-33115186IPR003657WRKY domain
SuperFamilySSF1182901.96E-28121187IPR003657WRKY domain
PROSITE profilePS5081128.552123188IPR003657WRKY domain
SMARTSM007745.6E-38128187IPR003657WRKY domain
PfamPF031063.7E-26129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEGRGHNIPP SNPSYIFTPS TLALPSLPPS LLHLQQHQPC QQPQQEPHDE MVGDIDWVSL  60
FSAPNINMLD SNQQLSASTS SVTVGSRGDG EINNDGIGKD KGKSSRSRTK KVCRPRFAFQ  120
TRSADDILDD GYRWRKYGQK SVKNSLHPRS YYRCTHHTCN VKKQVQRLSK DTSIIVTTYE  180
GIHNHPCEKL MESLSPLLKQ MQFLSRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-23116185271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083303.13e-77probable WRKY transcription factor 43
SwissprotQ9FFS31e-56WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A2G5E0D41e-154A0A2G5E0D4_AQUCA; Uncharacterized protein
STRINGAquca_013_00218.11e-155(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-59WRKY DNA-binding protein 24