PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G028200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 209aa MW: 23532 Da PI: 9.7263

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G028200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.4	1.6e-10	115	177	36	97
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 ++ + +++ W++++ y + + + +GWk+F +n+L++gD +vF+l+ + ++ +++v+++ Aqcoe7G028200.1.p 115 PVILTCRNKNWKMQY-YGVGYAHQKFDSGWKNFSIDNKLNVGDGCVFELTeCStECIKFRVQIL 177 345566889****.7666666789********************8854456777777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.12E-13	79	176	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-12	79	177	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.17E-11	82	178	No hit	No description
PROSITE profile	PS50863	10.461	84	180	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-8	95	176	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSLSIIKLNA HHLVHSKSFP RASKSRPNPI FQMEFSARRD GPSEGEKSRG KAKQKIKAKT 60 NKSCINNSQQ QLDEHWPLSD KPYFHYILAD YQVQNQFLLV LPAKIHKVLP KAIVPVILTC 120 RNKNWKMQYY GVGYAHQKFD SGWKNFSIDN KLNVGDGCVF ELTECSTECI KFRVQILSGE 180 LPAELLNRGD GSNSTPDGAT PDTPIIIF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246420.1	1e-40	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A2G5E0M9	1e-130	A0A2G5E0M9_AQUCA; Uncharacterized protein
STRING	Aquca_013_00263.1	1e-131	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe7G028200.1.p