PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G033100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 674aa    MW: 75350 Da    PI: 4.6025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G033100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.8e-084925271555
                        HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++N++f  Lr+l+P+ +      Kl+Ka++L  ++eY+k+L+
  Aqcoe7G033100.1.p 492 KLNDSFLVLRSLVPSmN------KLDKASVLGDTIEYLKDLE 527
                        89*************55......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-5016198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.077477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-6486532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-11488535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-9491531No hitNo description
Gene3DG3DSA:4.10.280.102.1E-11491536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5492527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MATGIQNQEL IQGDHLRKQF AIAVRSIQWS YAIFWSSTKQ QGVLEWTNGY YNGDIKTRKT  60
MQPMEFNVDK LGLKRSEQLK ELYECLAIGE TTEQAKRPSA SLSPEDLSDA EWYYLVCMSF  120
TFAPGVGLPG RTFANNQHIW LCNAQYADSK IFSRSLLAKS ASIQTIICFP WLGGVIEMGG  180
NDLVEEDLHL LQNIKTIFLE FPKHTCCEKS ISSLRNDDND DDPVCGIDHD VIDTLVFDKF  240
DTLINCGMQA EVQDQVFQFP IPQYTPIADF EFDQSGAKEV HTNFCEELKE DSPSEYSDGS  300
ETYQQTEDSF MMDGANGVSS QVQSWQFMDD DDFSNCVPVS MNSSDCISQT FFNPEKLISP  360
PKKETVNNTR LLDLEDCSHT KFSSLDLSAN DLHYTRTLSA ILGNSNHLIA APCSRNGNKK  420
SSFVMWKKGS SMVPQKPLSG TSQKILKKIL FEVPLLHGDC SINSTKEQGG ITGLPDVEHI  480
DVNHFLWDKK EKLNDSFLVL RSLVPSMNKL DKASVLGDTI EYLKDLERRV EELESRGRKK  540
CTDIAERASD NYFDNETANG KKPPLSKRKA CDVAEMDPEL SWVSPSDGLA VDISVCIEEK  600
EATIEMHVPW RECLLLEIMD VISNLQLDAH SVKSSTSDGI LSLTLNSKFR GTGLITAEKI  660
KSAVLEVVGS TTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-151719812192Transcription factor MYC3
4rqw_B4e-151719812192Transcription factor MYC3
4rs9_A4e-151719812192Transcription factor MYC3
4yz6_A4e-151719812192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255365.10.0PREDICTED: transcription factor GLABRA 3-like
RefseqXP_010255366.10.0PREDICTED: transcription factor GLABRA 3-like
TrEMBLA0A2G5E0Y90.0A0A2G5E0Y9_AQUCA; Uncharacterized protein
STRINGAquca_013_00309.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-161bHLH family protein