PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G041800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 431aa    MW: 47259.8 Da    PI: 5.3541
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G041800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2261.8e-691924283247
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + Ll cA+ +s+++ e+a ++L+rl+e +s++gd+++R+a+yf eAL +r+++      k+l+  +t ++ns+e l ++k++++++P+ kf+
  Aqcoe7G041800.1.p 192 KSLLLCAR-ISDSEPEKAIKTLNRLRESVSERGDSTERVAFYFSEALFSRISS------KSLKNFPTFDSNSEEFLLSYKALNDACPYSKFA 276
                        67999*99.88899**************************************9......777777777778********************* PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        hltaNqaIl+a+e+++++Hi+Df+i qGlQW+aLlqaLa+R++g+p  +Ri g+ +p+ g   + +l +tg+rL++fAe l+++++f++ + 
  Aqcoe7G041800.1.p 277 HLTANQAILKATESANQIHIVDFGIVQGLQWAALLQALATRSSGKPtLIRISGIPAPALGksPAASLIATGNRLREFAELLELNIQFEP-IL 367
                        ******************************************8877589*******999988999************************.79 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                        + +e+l+ +++rv+++E+laVn++lql++ll   ++++ + ++ Lkl ksl+Pkv+++ e e++
  Aqcoe7G041800.1.p 368 TPIEELNESSFRVNSDEVLAVNFMLQLYNLL---GEITLAVEKALKLAKSLNPKVLTLGEYEVS 428
                        9******************************...444445569*****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.01164430IPR005202Transcription factor GRAS
PfamPF035146.2E-67192428IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MICFLFSSRG TCVEEEKQKR KATNFIAVNS FYNSKNCDES LCLLVKTCLV SGNTCRLVKI  60
FSDSCEVKRN PAFGYDETIV SNGAAGAEST TESSEQQQQQ LCETWRSNPE FTIHVSDPFV  120
SSSSSQLTLP SPLFSDLQKP LFSNPPPLPT LEESSPPIPP PLTQKNKEIC TVSSHSPETE  180
SSPSHSPCSL LKSLLLCARI SDSEPEKAIK TLNRLRESVS ERGDSTERVA FYFSEALFSR  240
ISSKSLKNFP TFDSNSEEFL LSYKALNDAC PYSKFAHLTA NQAILKATES ANQIHIVDFG  300
IVQGLQWAAL LQALATRSSG KPTLIRISGI PAPALGKSPA ASLIATGNRL REFAELLELN  360
IQFEPILTPI EELNESSFRV NSDEVLAVNF MLQLYNLLGE ITLAVEKALK LAKSLNPKVL  420
TLGEYEVSLK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-901904294246GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267140.11e-138PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I01e-123SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2G5E1B70.0A0A2G5E1B7_AQUCA; Uncharacterized protein
STRINGAquca_013_00373.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-98GRAS family protein