PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G049000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 233aa    MW: 26158.1 Da    PI: 6.799
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G049000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1764115155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + y+GVr +  + +Wv+e+r+p   + k+ r++lg++ tae+Aa+a++ a+++l+g
  Aqcoe7G049000.1.p  64 PVYRGVRSRN-NDKWVCEVREP---NkKNSRIWLGTYETAEMAARAHDVAALALRG 115
                        68****9766.9******9998...4467*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1364115IPR001471AP2/ERF domain
SMARTSM003801.7E-2665129IPR001471AP2/ERF domain
PROSITE profilePS5103221.89165123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3165125IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2165125IPR016177DNA-binding domain
PRINTSPR003671.3E-76677IPR001471AP2/ERF domain
CDDcd000183.40E-2766125No hitNo description
PRINTSPR003671.3E-789105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEFFNQNFSP KHQLRSSKSS YIWDATESSD SSTLRSNSDG EVILASNRPK RSAGRKKFKE  60
TRHPVYRGVR SRNNDKWVCE VREPNKKNSR IWLGTYETAE MAARAHDVAA LALRGTSACL  120
NFADSMWRLP IPDSSDPKDI RKAASEAAEM FRQTSSTSPK NVSRMENVSK VVEQNNVFFL  180
DEEAEFGMPG LLASMAEGLL LSPPPSARSN DYFNWEDMGN DGEEVSLWSF SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14631221271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087006.18e-83dehydration-responsive element-binding protein 1B
SwissprotQ9FJ932e-67DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2G5E1M31e-171A0A2G5E1M3_AQUCA; Uncharacterized protein
STRINGAquca_013_00434.11e-171(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-58C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]